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[193038_at] Protein kinase/Aldehyde dehydrogenase

Description T15B12.2 /REP_DB=WormBase Gene ID /WP=CE01404 /TR=Q22518 /GB=AAA21560.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase-Aldehyde dehydrogenase
Cluster 6grp_high1_10_10 > 78      6grp_total > 86      4grp_total > 33      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 30.4
(-3)
A 		78.7
(3)
P 		69
(1.8)
P 		50.6
(-0.5)
P 		48
B 22.5
(-3)
A 		37.3
(-1.3)
A 		74.7
(3)
P 		63.6
(1.7)
P 		52
C 28.2
(-3)
A 		63.4
(1.8)
P 		33.5
(-2.3)
P 		71.9
(3)
P 		44
avr 27
(-3) 		59.8
(2.6) 		59.1
(2.5) 		62
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 12.4
(-3)
A 		17.9
(-2.6)
A 		39.8
(-1.1)
A 		41
(-1)
P 		54.1
(-0)
P 		97.1
(3)
P 		85
B 51.5
(0.8)
P 		20.3
(-3)
M 		28.8
(-2)
P 		58.4
(1.7)
P 		68.4
(2.9)
P 		69.2
(3)
P 		49
C 7.4
(-3)
A 		42.2
(-0.7)
P 		51.4
(-0.1)
P 		56.1
(0.2)
P 		63.5
(0.7)
P 		99
(3)
P 		92
avr 23.8
(-3) 		26.8
(-2.7) 		40
(-1.5) 		51.8
(-0.4) 		62
(0.5) 		88.4
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.1
(-0.9)
A 		17.1
(2.5)
P 		18
(3)
P 		7.4
(-3)
P 		11
B 7.2
(-3)
A 		9.2
(-1.8)
A 		17.3
(3)
P 		13.6
(0.8)
P 		10
C 9.3
(-3)
A 		18.2
(3)
P 		11.7
(-1.4)
P 		12.1
(-1.1)
P 		9
avr 9.2
(-3) 		14.8
(2.2) 		15.7
(3) 		11
(-1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2.3
(-3)
A 		6.4
(-1.8)
A 		8.7
(-1.2)
A 		10.4
(-0.7)
P 		16.3
(0.9)
P 		23.6
(3)
P 		21
B 17.9
(0.2)
P 		6.8
(-3)
M 		7
(-2.9)
P 		15.5
(-0.5)
P 		27.8
(3)
P 		25.8
(2.4)
P 		21
C 2.7
(-3)
A 		12.9
(-1)
P 		13.1
(-1)
P 		11.3
(-1.3)
P 		20.5
(0.5)
P 		33.2
(3)
P 		31
avr 7.6
(-3) 		8.7
(-2.7) 		9.6
(-2.4) 		12.4
(-1.6) 		21.5
(1.2) 		27.5
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6009
Sequence Type Exemplar sequence
Representative Public ID T15B12.2 NCBI
Target Description T15B12.2 /REP_DB=WormBase Gene ID /WP=CE01404 /TR=Q22518 /GB=AAA21560.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase-Aldehyde dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065731 NCBI Caenorhabditis elegans T15B12.2 (T15B12.2) mRNA, complete cds. 11/11 None
T15B12.2 ENSEMBL cdna:known chromosome:CEL140:III:5299770:5301832:-1 gene:T15B12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5299768-5301831(-) 97.75 100.0
Public Domain and Genome References
Gene Title Protein kinase/Aldehyde dehydrogenase
Ensembl T15B12.2
Entrez Gene 188528 Entrez gene
SwissProt Q22518 EMBL-EBI
WormBase CE38547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498132 T15B12.2 [Caenorhabditis elegans] gb|AAA21560.2| Hypothetical protein T15B12.2 [Caenorhabditis elegans] 0.0
blast NP_498132 T15B12.2 [Caenorhabditis elegans] gb|AAA21560.2| Hypothetical protein T15B12.2 [Caenorhabditis elegans] 1.0E-176
blast CAE75087 Hypothetical protein CBG23007 [Caenorhabditis briggsae] 1.0E-125
blast CAE75087 Hypothetical protein CBG23007 [Caenorhabditis briggsae] 2.0E-97
blast NP_494824 T05A7.6 [Caenorhabditis elegans] gb|AAA81115.1| Hypothetical protein T05A7.6 [Caenorhabditis elegans] 1.0E-41
blast NP_494824 T05A7.6 [Caenorhabditis elegans] gb|AAA81115.1| Hypothetical protein T05A7.6 [Caenorhabditis elegans] 5.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.3E-17
Pfam IPR000719 EMBL-EBI Protein kinase 8.8E-4
Pfam IPR000719 EMBL-EBI Protein kinase 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:193038_AT
aagagaacgtgttccattctttggaactcggaaattctcgagtcgtgcatgtcaccagga
aaaagaccaaggaagaaaagacgatatggagacttatctctacacgattctggatctctt
ccacaatgaacgaggactttcgtggaaactcgataagattattccatccggaattgataa
catcatcgtctacttgcgaggtttgaaattcgaagatccagttgactatagacaaattga
gaatgagcttcgcacggctggaaagaagatggcaccgtccgattcgagcgatgaaacaat
ggattggactggaaagttggaacaactgctgaaagaggcaaataagaataaggctgttgg
aacaccgaaaggagaggaaactctgttgtatgaacggctcaaggcaaaacgtgacaggga
tatgacgactgatgctgtcaaaacagtggaaatgcgtgcaactataaatagagacgtgga
tgcatcagagggaatgttcaacgacaaaggactcactactcgaacaaccttggtgtctgt
tgaacttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGAACGTGTTCCATTCTTTGGA 195 131 513 Antisense
TCTCGAGTCGTGCATGTCACCAGGA 459 611 548 Antisense
GGAGACTTATCTCTACACGATTCTG 543 519 600 Antisense
CACGATTCTGGATCTCTTCCACAAT 363 199 615 Antisense
AACATCATCGTCTACTTGCGAGGTT 477 137 691 Antisense
GAATGAGCTTCGCACGGCTGGAAAG 623 329 753 Antisense
GAAAGAAGATGGCACCGTCCGATTC 603 359 773 Antisense
GCACCGTCCGATTCGAGCGATGAAA 369 315 784 Antisense
GAAACTCTGTTGTATGAACGGCTCA 375 355 889 Antisense
GACAAAGGACTCACTACTCGAACAA 424 365 1015 Antisense
AACCTTGGTGTCTGTTGAACTTCCT 16 147 1038 Antisense
Sequence Source Affymetrix Proprietary Database