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[193037_s_at]

Description W01C8.2 /REP_DB=WormBase Gene ID /WP=CE05030 /CHR=X /FEA=Sanger Annotation /DEF=M. musculus SOX-LZ protein and human HMG protein (ST.LOUIS) protein_id:AAG00024.1
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 02      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 52      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 390
(3)
P 		306.2
(1.3)
P 		215.2
(-0.6)
P 		102.4
(-3)
P 		288
B 253.8
(3)
P 		211.2
(1.2)
P 		171.3
(-0.4)
P 		108.2
(-3)
P 		146
C 318.5
(3)
P 		316.2
(2.9)
P 		218.3
(0.2)
P 		103.1
(-3)
P 		215
avr 320.8
(3) 		277.9
(1.8) 		201.6
(-0.3) 		104.6
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 164.1
(-2.5)
P 		360.8
(3)
P 		171.1
(-2.3)
P 		234.5
(-0.6)
P 		295.9
(1.2)
P 		147.8
(-3)
P 		213
B 260
(1.8)
P 		302.6
(3)
P 		186.2
(-0.3)
P 		162.5
(-1)
P 		203.4
(0.2)
P 		90.9
(-3)
P 		212
C 402.8
(3)
P 		249
(0.3)
P 		257.1
(0.5)
P 		212.8
(-0.3)
P 		266.4
(0.6)
P 		58.1
(-3)
P 		345
avr 275.6
(2.2) 		304.1
(3) 		204.8
(0.1) 		203.3
(0.1) 		255.2
(1.6) 		98.9
(-3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 142
(3)
P 		66.5
(-0.6)
P 		56.3
(-1)
P 		15
(-3)
P 		127
B 80.9
(3)
P 		52.2
(0)
P 		39.7
(-1.3)
P 		23.1
(-3)
P 		58
C 105.4
(3)
P 		90.9
(2)
P 		76.1
(1)
P 		17.4
(-3)
P 		88
avr 109.4
(3) 		69.9
(0.4) 		57.4
(-0.4) 		18.5
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 30.2
(-3)
P 		128.3
(3)
P 		37.3
(-2.6)
P 		59.5
(-1.2)
P 		89.3
(0.6)
P 		36
(-2.6)
P 		98
B 90.5
(2.1)
P 		100.7
(3)
P 		45.2
(-2)
P 		43
(-2.2)
P 		82.6
(1.4)
P 		33.9
(-3)
P 		67
C 149.3
(3)
P 		76
(-0.4)
P 		65.4
(-0.9)
P 		42.8
(-1.9)
P 		86.2
(0.1)
P 		19.4
(-3)
P 		130
avr 90
(2) 		101.7
(3) 		49.3
(-1.4) 		48.4
(-1.4) 		86
(1.7) 		29.8
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193037_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16158
Sequence Type Exemplar sequence
Representative Public ID W01C8.2 NCBI
Target Description W01C8.2 /REP_DB=WormBase Gene ID /WP=CE05030 /CHR=X /FEA=Sanger Annotation /DEF=M. musculus SOX-LZ protein and human HMG protein (ST.LOUIS) protein_id:AAG00024.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029747(11), NM_001029748(11), NM_001029749(11), NM_001029750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029747 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029748 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029749 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029750 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
SNAP00000032373 ENSEMBL cdna:SNAP chromosome:CEL140:X:5672186:5673344:1 11/11 None
GENEFINDER00000032385 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5672186:5673344:1 11/11 None
T22B7.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:5663795:5673344:1 gene:T22B7.1 11/11 None
T22B7.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:5668278:5674018:1 gene:T22B7.1 11/11 None
T22B7.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:5669645:5673344:1 gene:T22B7.1 11/11 None
T22B7.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:5671331:5673344:1 gene:T22B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5672167-5673344(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04597 Egg laying defective protein 13, isoform a [Caenorhabditis elegans] ref|NP_001024918.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] gb|AAD12252.1| Sox domain protein COG-2 [Caenorhabditis elegans] 0.0
blast AAX88814 Egg laying defective protein 13, isoform c [Caenorhabditis elegans] ref|NP_001024920.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] 0.0
blast CAE68778 Hypothetical protein CBG14721 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Sequence
Target Sequence 
>C. ELEGANS:193037_S_AT
tccactatctggatttcggctaccatactcacttgggacaaattatggaagcgatggtca
attatttaacaattgctcaccaaattccagtggtaagagcacgcctggtaacacatcagt
aactagtgaagtagcaactccacgaccacaggccaaatcaccaaaccatatcaaaagacc
aatgaacgcattcatggtatgggctcgtgacgagagacgaaaaattttgaaagcgtatcc
ggatatgcacaacagcaacatctcgaagatcctcggatctcgttggaaaggtatgagcaa
ttccgagaaacagccatactatgaagagcaatcacggctgagcaaattgcacatggagca
gcacccggactatcggtacagaccacgtccgaagagaacatgtgtgattgatggaaagaa
ggttcgagtcaacgaatataagacaatcatgaagactaaaaaagatttgatgtggggaga
tgagccaggattttctcaaccatcagatctacaaatggacttggcatcacatgtaaatct
tctcaacgacctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTATCTGGATTTCGGCTACCA 217 587 375 Antisense
TCGGCTACCATACTCACTTGGGACA 421 607 390 Antisense
ACAATTGCTCACCAAATTCCAGTGG 228 115 443 Antisense
GTAAGAGCACGCCTGGTAACACATC 641 461 467 Antisense
AGTGAAGTAGCAACTCCACGACCAC 135 61 499 Antisense
GCATTCATGGTATGGGCTCGTGACG 426 307 562 Antisense
GCGTATCCGGATATGCACAACAGCA 611 291 607 Antisense
GCAACATCTCGAAGATCCTCGGATC 246 319 629 Antisense
GCACCCGGACTATCGGTACAGACCA 133 311 735 Antisense
GAGCCAGGATTTTCTCAACCATCAG 497 385 856 Antisense
ATGTAAATCTTCTCAACGACCTCAC 364 23 905 Antisense
Sequence Source Affymetrix Proprietary Database