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[193035_at] CCAAT binding factor 1 protein like

Description F23B12.7 /REP_DB=WormBase Gene ID /WP=CE09599 /TR=SW:Q19753 /GB=CAB01168.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=CCAAT binding factor 1 protein like
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 317.3
(1.9)
P 		189.1
(-3)
P 		346.9
(3)
P 		242.9
(-1)
P 		158
B 444.5
(3)
P 		179.5
(-3)
P 		431.5
(2.7)
P 		315.2
(0.1)
P 		265
C 406.7
(3)
P 		185.5
(-3)
P 		328.7
(0.9)
P 		214.1
(-2.2)
P 		221
avr 389.5
(3) 		184.7
(-3) 		369
(2.4) 		257.4
(-0.9) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 132.6
(-3)
P 		330.3
(1.9)
P 		206.7
(-1.2)
P 		242
(-0.3)
P 		178.5
(-1.9)
P 		374.7
(3)
P 		242
B 281.5
(-0.9)
P 		216
(-2.1)
P 		211
(-2.2)
P 		164.9
(-3)
P 		200.3
(-2.4)
P 		496
(3)
P 		331
C 259.3
(-2.2)
P 		211.6
(-3)
P 		333.2
(-0.9)
P 		239.4
(-2.5)
P 		240
(-2.5)
P 		553
(3)
P 		341
avr 224.5
(-2.6) 		252.6
(-2) 		250.3
(-2) 		215.4
(-2.8) 		206.3
(-3) 		474.6
(3) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 115.5
(3)
P 		41.1
(-2.6)
P 		90.7
(1.1)
P 		35.6
(-3)
P 		80
B 141.8
(3)
P 		44.3
(-3)
P 		100
(0.4)
P 		67.2
(-1.6)
P 		98
C 134.6
(3)
P 		53.3
(-2)
P 		114.6
(1.8)
P 		36.1
(-3)
P 		99
avr 130.6
(3) 		46.2
(-3) 		101.8
(1) 		46.3
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 24.4
(-3)
P 		117.5
(3)
P 		45
(-1.7)
P 		61.4
(-0.6)
P 		53.9
(-1.1)
P 		91.2
(1.3)
P 		93
B 97.9
(-0.7)
P 		71.9
(-1.8)
P 		51.2
(-2.7)
P 		43.7
(-3)
P 		81.4
(-1.4)
P 		185
(3)
P 		141
C 96.1
(-0.9)
P 		64.6
(-2.3)
P 		84.8
(-1.4)
P 		48.1
(-3)
P 		77.6
(-1.7)
P 		185.1
(3)
P 		137
avr 72.8
(-1.7) 		84.7
(-1) 		60.3
(-2.5) 		51.1
(-3) 		71
(-1.8) 		153.8
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12914
Sequence Type Exemplar sequence
Representative Public ID F23B12.7 NCBI
Target Description F23B12.7 /REP_DB=WormBase Gene ID /WP=CE09599 /TR=SW:Q19753 /GB=CAB01168.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=CCAAT binding factor 1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074180 NCBI Caenorhabditis elegans F23B12.7 (F23B12.7) mRNA, complete cds. 11/11 None
SNAP00000025808 ENSEMBL cdna:SNAP chromosome:CEL140:V:14452303:14455458:1 11/11 None
GENEFINDER00000025817 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14452303:14455458:1 11/11 None
F23B12.7.2 ENSEMBL cdna:known chromosome:CEL140:V:14452286:14455549:1 gene:F23B12.7 11/11 None
F23B12.7.1 ENSEMBL cdna:known chromosome:CEL140:V:14452301:14455549:1 gene:F23B12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14452302-14455458(+) 96.3 100.0
Public Domain and Genome References
Gene Title CCAAT binding factor 1 protein like
Ensembl F23B12.7
Entrez Gene 179947 Entrez gene
SwissProt Q19753 EMBL-EBI
WormBase CE09599 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260425_AT CCAAT-box-binding transcription factor-related at
CANINE_2:CFA.20884.1.S1_S_AT similar to CCAAT/enhancer binding protein zeta cfa
CANINE_2:CFA.20967.1.S1_S_AT similar to CCAAT/enhancer binding protein zeta cfa
CANINE_2:CFAAFFX.10125.1.S1_AT similar to CCAAT/enhancer binding protein zeta cfa
DROSOPHILA_2:1636346_AT dm
DROSGENOME1:141506_AT dm
CHICKEN:GGAAFFX.12830.1.S1_AT CCAAT/enhancer binding protein zeta gga
HG-U133A_2:203341_AT CCAAT/enhancer binding protein zeta hs
HG-U133A:203341_AT CCAAT/enhancer binding protein zeta hs
HG-U133_PLUS_2:203341_AT CCAAT/enhancer binding protein zeta hs
HG-FOCUS:203341_AT CCAAT/enhancer binding protein zeta hs
HG-U95AV2:229_AT CCAAT/enhancer binding protein zeta hs
HC-G110:229_AT CCAAT/enhancer binding protein zeta hs
HG-U95AV2:32194_AT CCAAT/enhancer binding protein zeta hs
HU35KSUBC:RC_R99122_AT CCAAT/enhancer binding protein zeta hs
HUGENEFL:M37197_AT CCAAT/enhancer binding protein zeta hs
U133_X3P:G5031624_3P_AT CCAAT/enhancer binding protein zeta hs
HG-U95B:42066_R_AT CCAAT/enhancer binding protein zeta hs
HG-U133_PLUS_2:231819_AT CCAAT/enhancer binding protein zeta hs
HG-U133B:231819_AT CCAAT/enhancer binding protein zeta hs
HG-U133_PLUS_2:229746_X_AT CCAAT/enhancer binding protein zeta hs
HG-U133B:229746_X_AT CCAAT/enhancer binding protein zeta hs
HU35KSUBA:R71539_AT CCAAT/enhancer binding protein zeta hs
HU35KSUBA:H82162_AT CCAAT/enhancer binding protein zeta hs
HU35KSUBD:RC_T47491_AT CCAAT/enhancer binding protein zeta hs
HU35KSUBD:RC_H97878_F_AT CCAAT/enhancer binding protein zeta hs
HU35KSUBD:RC_H82063_F_AT CCAAT/enhancer binding protein zeta hs
U133_X3P:HS2.381077.1.S1_3P_S_AT CCAAT/enhancer binding protein zeta hs
U133_X3P:HS.132390.2.S1_3P_AT CCAAT/enhancer binding protein zeta hs
U133_X3P:HS.132390.0.A1_3P_S_AT CCAAT/enhancer binding protein zeta hs
HG-U133_PLUS_2:1564381_S_AT CCAAT/enhancer binding protein zeta hs
HG-U95C:65289_I_AT CCAAT/enhancer binding protein zeta hs
HG-U95C:65290_F_AT CCAAT/enhancer binding protein zeta hs
HG-U95C:50401_AT CCAAT/enhancer binding protein zeta hs
HG-U95C:50404_AT CCAAT/enhancer binding protein zeta hs
MOE430A:1429962_AT CCAAT/enhancer binding protein zeta mm
MOUSE430A_2:1429962_AT CCAAT/enhancer binding protein zeta mm
MOUSE430_2:1429962_AT CCAAT/enhancer binding protein zeta mm
MOUSE430_2:1420497_A_AT CCAAT/enhancer binding protein zeta mm
MOE430A:1420497_A_AT CCAAT/enhancer binding protein zeta mm
MOUSE430A_2:1420497_A_AT CCAAT/enhancer binding protein zeta mm
MU11KSUBA:U19891_S_AT CCAAT/enhancer binding protein zeta mm
MG-U74AV2:94467_AT CCAAT/enhancer binding protein zeta mm
MG-U74AV2:94466_F_AT CCAAT/enhancer binding protein zeta mm
MG-U74CV2:166836_AT CCAAT/enhancer binding protein zeta mm
MG-U74BV2:164198_AT CCAAT/enhancer binding protein zeta (Cebpz), transcript variant 2, mRNA mm
MU19KSUBC:TC39013_AT CCAAT/enhancer binding protein zeta (Cebpz), transcript variant 2, mRNA mm
RG-U34C:RC_AI103246_AT CCAAT/enhancer binding protein zeta (predicted) rn
RAE230A:1374842_AT CCAAT/enhancer binding protein zeta (predicted) rn
RAT230_2:1374842_AT CCAAT/enhancer binding protein zeta (predicted) rn
YEAST_2:1773258_AT Constituent of 66S pre-ribosomal particles, required for large (60S) ribosomal subunit biogenesis; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01168 Hypothetical protein F23B12.7 [Caenorhabditis elegans] ref|NP_506581.1| F23B12.7 [Caenorhabditis elegans] sp|Q19753|YU0O_CAEEL Hypothetical protein F23B12.7 in chromosome V 0.0
blast CAE60895 Hypothetical protein CBG04610 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005612 EMBL-EBI CBF/Mak21 family 1.0E-126
Pfam IPR005612 EMBL-EBI CBF/Mak21 family 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193035_AT
catcgttatacgtcaagtctgcagaaggaaaagaaggtgaaaaaggagaatggcgacgat
gattgggagtatgcagaatctgtaagctctgccgaatttgatcaattactcgagcgattc
gaaccgggagagctcaacgaagaatttgatatcgactatagtaaagagtttggagctgaa
aagagcaagagaaataagaagaaggatgttgaggaggatgacgtggatatggatgaagat
gatgatattgacttgaatgatttgaatgaggaagaagatggtggaatggaagatgatgat
gaggatgatggtgatatggatgatgatgatgaagatgacgaagacgctgaagatgatgat
gaagtagatgatgatgatgaggatgatgatgaagatggcggctttggaggaaagagttct
gcgaatatctttggagatgctgacgagtctagtgatgaagaaatcggagctaatgattac
gaaatggccggagataaattcgcagaaatgttggaagatttggaagaggacgatggcaaa
cgtggaaagaagaaaggtggaaagaagagaggatcgactggaggtttcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGTTATACGTCAAGTCTGCAGA 628 211 2251 Antisense
GGCGACGATGATTGGGAGTATGCAG 639 541 2302 Antisense
AGAATCTGTAAGCTCTGCCGAATTT 341 73 2325 Antisense
GTAAGCTCTGCCGAATTTGATCAAT 57 463 2332 Antisense
TTTGATCAATTACTCGAGCGATTCG 150 667 2347 Antisense
GCGATTCGAACCGGGAGAGCTCAAC 689 287 2364 Antisense
GATGAAGATGGCGGCTTTGGAGGAA 644 411 2638 Antisense
AAGAGTTCTGCGAATATCTTTGGAG 246 155 2662 Antisense
GGAGATGCTGACGAGTCTAGTGATG 69 519 2683 Antisense
AATGGCCGGAGATAAATTCGCAGAA 73 159 2733 Antisense
GAGAGGATCGACTGGAGGTTTCAAG 239 393 2817 Antisense
Sequence Source Affymetrix Proprietary Database