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[193033_at] glutamate receptor epsilon subunit like

Description F23A7.4 /REP_DB=WormBase Gene ID /WP=CE09578 /TR=Q93557 /GB=CAB02978.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glutamate receptor epsilon subunit like
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 85      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 39      6grp_total > 84      4grp_total > 32      6grp_highest_sub > In      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9383
1 2 3 4 range
A 5570.1
(-3)
P 		8683.6
(-0.3)
P 		12386.9
(3)
P 		10030.7
(0.9)
P 		6817
B 4857.1
(-3)
P 		9353.3
(2.4)
P 		9843.8
(3)
P 		9808.7
(3)
P 		4987
C 4675.2
(-3)
P 		9525.8
(0.1)
P 		12826.9
(2.2)
P 		14058.5
(3)
P 		9383
avr 5034.1
(-3) 		9187.6
(0.7) 		11685.9
(3) 		11299.3
(2.7) 		6652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5957
1 2 3 4 5 6 range
A 4752.7
(-3)
P 		6119.6
(-1.6)
P 		10709.8
(3)
P 		8106.9
(0.4)
P 		7693.6
(-0)
P 		7632.4
(-0.1)
P 		5957
B 5765.2
(-3)
P 		7369.3
(0.3)
P 		6480.7
(-1.5)
P 		6730.5
(-1)
P 		8654.1
(3)
P 		8567
(2.8)
P 		2889
C 5195.7
(-3)
P 		8641.8
(2.1)
P 		5202.7
(-3)
P 		7509.7
(0.4)
P 		8416.1
(1.8)
P 		9248.3
(3)
P 		4053
avr 5237.9
(-3) 		7376.9
(1) 		7464.4
(1.1) 		7449
(1.1) 		8254.6
(2.6) 		8482.6
(3) 		3245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3002
1 2 3 4 range
A 2028.1
(-1.1)
P 		1885
(-1.6)
P 		3238.2
(3)
P 		1468.3
(-3)
P 		1770
B 1548.9
(-3)
P 		2310.1
(3)
P 		2281
(2.8)
P 		2090.2
(1.3)
P 		761
C 1547.6
(-3)
P 		2738.7
(-0.6)
P 		4470.6
(3)
P 		2370.5
(-1.3)
P 		2923
avr 1708.2
(-3) 		2311.3
(-0.8) 		3329.9
(3) 		1976.3
(-2) 		1622

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2640
1 2 3 4 5 6 range
A 876.1
(-3)
P 		2176.4
(2.4)
P 		2332.4
(3)
P 		2056.1
(1.9)
P 		2321.6
(3)
P 		1858.3
(1)
P 		1456
B 2006
(-1.7)
P 		2452.9
(-0.3)
P 		1573.7
(-3)
P 		1782.7
(-2.4)
P 		3516
(3)
P 		3194.6
(2)
P 		1942
C 1925.8
(-1)
P 		2636.9
(1.4)
P 		1324.2
(-3)
P 		1510.2
(-2.4)
P 		2723.3
(1.7)
P 		3096
(3)
P 		1772
avr 1602.6
(-3) 		2422.1
(0.9) 		1743.4
(-2.3) 		1783
(-2.1) 		2853.6
(3) 		2716.3
(2.3) 		1251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17763
Sequence Type Exemplar sequence
Representative Public ID F23A7.4 NCBI
Target Description F23A7.4 /REP_DB=WormBase Gene ID /WP=CE09578 /TR=Q93557 /GB=CAB02978.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glutamate receptor epsilon subunit like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078240 NCBI Caenorhabditis elegans F23A7.4 (F23A7.4) mRNA, complete cds. 11/11 None
SNAP00000042965 ENSEMBL cdna:SNAP chromosome:CEL140:X:16212520:16212726:1 11/11 None
SNAP00000042966 ENSEMBL cdna:SNAP chromosome:CEL140:X:16213287:16213490:1 9/11 None
F23A7.4 ENSEMBL cdna:known chromosome:CEL140:X:16212520:16212726:1 gene:F23A7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042123 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16212519-16212726(+) 55.07 100.0
chrX:17399718-17399932(-) 52.17 96.62
chrX:17077723-17077924(-) 48.31 90.82
Public Domain and Genome References
Gene Title glutamate receptor epsilon subunit like
Ensembl F23A7.4
Entrez Gene 184879 Entrez gene
SwissProt Q93557 EMBL-EBI
WormBase CE09578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02978 Hypothetical protein F23A7.4 [Caenorhabditis elegans] ref|NP_510641.1| F23A7.4 [Caenorhabditis elegans] 3.0E-33
blast CAJ34989 Hypothetical protein F23A7.8 [Caenorhabditis elegans] 6.0E-33
blast CAJ34989 Hypothetical protein F23A7.8 [Caenorhabditis elegans] 3.0E-27
blast CAB02978 Hypothetical protein F23A7.4 [Caenorhabditis elegans] ref|NP_510641.1| F23A7.4 [Caenorhabditis elegans] 3.0E-27
Sequence
Target Sequence 
>C. ELEGANS:193033_AT
atgctgcaatggggcgtcgatagctcagttggttacaacactgacttgcaatcgacaggt
cacgagttcaagtccggcctagtccccccaggtttgctcagcctggagattgatgagtat
tcattgggttgccatcaaacccaatgtcttatgtcgatggtggtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTGCAATGGGGCGTCGATAGCT 146 41 13 Antisense
GGCGTCGATAGCTCAGTTGGTTACA 390 539 25 Antisense
GTTACAACACTGACTTGCAATCGAC 699 445 44 Antisense
TGCAATCGACAGGTCACGAGTTCAA 679 575 59 Antisense
CCCCCAGGTTTGCTCAGCCTGGAGA 157 259 97 Antisense
GGTTTGCTCAGCCTGGAGATTGATG 595 505 103 Antisense
AGCCTGGAGATTGATGAGTATTCAT 571 83 112 Antisense
GAGTATTCATTGGGTTGCCATCAAA 610 397 127 Antisense
GTTGCCATCAAACCCAATGTCTTAT 693 439 140 Antisense
TCAAACCCAATGTCTTATGTCGATG 248 629 147 Antisense
AATGTCTTATGTCGATGGTGGTGTC 594 163 155 Antisense
Sequence Source Affymetrix Proprietary Database