[Home] | [Total List]

[193031_at] sodium/phosphate transporter protein

Description T07A5.3 /REP_DB=WormBase Gene ID /WP=CE01648 /TR=SW:Q10046 /GB=CAA88134.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter protein
Cluster 6grp_high1_10_10 > 43      6grp_total > 10      4grp_total > 59      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 66.9
(-0.1)
P 		52.3
(-0.9)
P 		125.2
(3)
P 		13.3
(-3)
A 		112
B 81
(1.4)
P 		91.9
(2.1)
A 		107.6
(3)
P 		7.8
(-3)
A 		100
C 58.8
(-0.1)
P 		103.9
(2.3)
P 		115.9
(3)
P 		6.1
(-3)
A 		110
avr 68.9
(0.4) 		82.7
(1.1) 		116.2
(3) 		9.1
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 68.2
(-3)
A 		167.5
(3)
P 		145.2
(1.7)
P 		73.6
(-2.7)
P 		105.3
(-0.8)
P 		72.5
(-2.7)
P 		99
B 58.6
(-3)
P 		122.8
(1.3)
P 		101.5
(-0.1)
P 		90.3
(-0.9)
P 		148.5
(3)
P 		59.7
(-2.9)
P 		90
C 86
(-1)
P 		152.9
(3)
P 		134.1
(1.9)
P 		77.3
(-1.5)
A 		94.3
(-0.5)
P 		53
(-3)
A 		100
avr 70.9
(-2.4) 		147.7
(3) 		126.9
(1.5) 		80.4
(-1.7) 		116
(0.8) 		61.7
(-3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 24.4
(1.4)
P 		11.3
(-1.2)
P 		32.7
(3)
P 		1.9
(-3)
A 		31
B 25.8
(3)
P 		22.7
(2.2)
A 		24.9
(2.8)
P 		1.7
(-3)
A 		24
C 19.5
(-0.2)
P 		29.9
(1.4)
P 		40.4
(3)
P 		1
(-3)
A 		39
avr 23.2
(1.2) 		21.3
(0.8) 		32.7
(3) 		1.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 12.6
(-3)
A 		59.6
(3)
P 		31.6
(-0.6)
P 		18.7
(-2.2)
P 		31.8
(-0.5)
P 		17.6
(-2.4)
P 		47
B 20.4
(-3)
P 		40.9
(0.1)
P 		24.6
(-2.4)
P 		23.9
(-2.5)
P 		60.3
(3)
P 		22.2
(-2.7)
P 		40
C 31.9
(0.2)
P 		46.7
(3)
P 		34.1
(0.6)
P 		15.5
(-3)
A 		30.5
(-0.1)
P 		17.7
(-2.6)
A 		31
avr 21.6
(-2.5) 		49.1
(3) 		30.1
(-0.8) 		19.4
(-3) 		40.9
(1.4) 		19.2
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6250
Sequence Type Exemplar sequence
Representative Public ID T07A5.3 NCBI
Target Description T07A5.3 /REP_DB=WormBase Gene ID /WP=CE01648 /TR=SW:Q10046 /GB=CAA88134.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066876 NCBI Caenorhabditis elegans T07A5.3 (T07A5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000030116 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10300144:10303822:1 11/11 None
T07A5.3 ENSEMBL cdna:known chromosome:CEL140:III:10300278:10303231:1 gene:T07A5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030109 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10300307-10303172(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter protein
Ensembl T07A5.3
Entrez Gene 176442 Entrez gene
SwissProt Q10046 EMBL-EBI
WormBase CE01648 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88134 Hypothetical protein T07A5.3 [Caenorhabditis elegans] ref|NP_499277.1| T07A5.3 [Caenorhabditis elegans] sp|Q10046|YRT3_CAEEL Hypothetical protein T07A5.3 in chromosome III 0.0
blast CAA88135 Hypothetical protein K10G9.1 [Caenorhabditis elegans] emb|CAA85289.1| Hypothetical protein K10G9.1 [Caenorhabditis elegans] ref|NP_499276.1| K10G9.1 [Caenorhabditis elegans] 0.0
blast CAE56802 Hypothetical protein CBG24614 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499277.1 11 48-70,91-113,128-150,155-177,192-214,221-240,287-309,322-344,385-407,419-441,451-470
T07A5.3 11 48-70,91-113,128-150,155-177,192-214,221-240,287-309,322-344,385-407,419-441,451-470
GENEFINDER00000030116 11 104-126,147-169,184-206,211-233,248-270,277-296,343-365,378-400,441-463,475-497,507-526
Sequence
Target Sequence 
>C. ELEGANS:193031_AT
tagccaccggtcaactctgtgattacctaagatcttctggaaaaatgagcacagaagccg
tcagaaaatcagtgaacacttttggattcacagttgaagcaatgatgctaggatgtctgg
cgtttgttcgggatcctgtgattgcggtgacgtgcctggtcatcgcgtgtaccggatctg
gatccgtactttctggattcaacgtcaaccatttcgatattgctccaaggtatgctccga
tccttatgggaattgctaacgggctcggagcagttgcaggagttggaggaatggtaacga
atacggttacctatcagaacccagatggctggaaatgggtctttcttttggccatggcga
ttgatatttttggagtaattttcttcctcattttcgcgaagggtgatgttttgccgtggg
cccgcgagccggaaaaggaggaaacgttcaacgagtttgttcgcagaatgtcgatcaaag
tgagaagtttgtctagaaaaacaaggaatcgggaaggcgacacgagttatgaaaaaatgg
aagaagactcggagatgaagccttgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCCACCGGTCAACTCTGTGATTA 648 649 1028 Antisense
GATCCTGTGATTGCGGTGACGTGCC 258 415 1159 Antisense
ATCGCGTGTACCGGATCTGGATCCG 123 35 1189 Antisense
GGATCCGTACTTTCTGGATTCAACG 174 513 1207 Antisense
ACGTCAACCATTTCGATATTGCTCC 293 95 1229 Antisense
TATTGCTCCAAGGTATGCTCCGATC 489 663 1245 Antisense
ATGGGAATTGCTAACGGGCTCGGAG 112 51 1273 Antisense
GTTACCTATCAGAACCCAGATGGCT 45 447 1333 Antisense
AATGGGTCTTTCTTTTGGCCATGGC 306 163 1361 Antisense
CGCGAAGGGTGATGTTTTGCCGTGG 575 239 1422 Antisense
GACTCGGAGATGAAGCCTTGCTCCA 74 375 1573 Antisense
Sequence Source Affymetrix Proprietary Database