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[193030_s_at] Yeast hypothetical 52.9 KD protein like

Description R11H6.1 /REP_DB=WormBase Gene ID /WP=CE12770 /TR=O18000 /GB=CAB07646.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical 52.9 KD protein like
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 35      6grp_total > 62      4grp_total > 58      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4311
1 2 3 4 range
A 2862.7
(-0.6)
P 		5121.1
(2.9)
P 		5186.5
(3)
P 		1338.2
(-3)
P 		3848
B 3119.2
(-0.5)
P 		4861.7
(1.9)
P 		5642.5
(3)
P 		1331.1
(-3)
P 		4311
C 3056.6
(-0.6)
P 		4469.3
(1.9)
P 		5100.7
(3)
P 		1657.9
(-3)
P 		3443
avr 3012.8
(-0.6) 		4817.4
(2.2) 		5309.9
(3) 		1442.4
(-3) 		3868

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3914
1 2 3 4 5 6 range
A 2426.7
(-1.8)
P 		3941
(1)
P 		5024.1
(3)
P 		4829.9
(2.6)
P 		2703
(-1.3)
P 		1802.9
(-3)
P 		3221
B 2431.4
(-1.9)
P 		4121.4
(0.7)
P 		5639.4
(3)
P 		4665.1
(1.5)
P 		3103.7
(-0.9)
P 		1725.2
(-3)
P 		3914
C 2572.1
(-1.8)
P 		4035.2
(0.6)
P 		5429.5
(3)
P 		4609.7
(1.6)
P 		2681.8
(-1.6)
P 		1869.6
(-3)
P 		3560
avr 2476.7
(-1.9) 		4032.5
(0.8) 		5364.3
(3) 		4701.6
(1.9) 		2829.5
(-1.3) 		1799.2
(-3) 		3565
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1582
1 2 3 4 range
A 1042.3
(1.4)
P 		1111.7
(1.7)
P 		1355.9
(3)
P 		195.9
(-3)
P 		1160
B 994.7
(1.2)
P 		1200.7
(2.4)
P 		1307.5
(3)
P 		283.7
(-3)
P 		1024
C 1011.8
(-0.1)
P 		1285
(1)
P 		1777.8
(3)
P 		279.5
(-3)
P 		1498
avr 1016.3
(0.7) 		1199.1
(1.6) 		1480.4
(3) 		253
(-3) 		1227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 963
1 2 3 4 5 6 range
A 447.3
(-2.9)
P 		1401.6
(3)
P 		1094.1
(1.1)
P 		1225
(1.9)
P 		815.6
(-0.7)
P 		439
(-3)
P 		963
B 846
(-1.3)
P 		1371.8
(3)
P 		1369.4
(3)
P 		1235.6
(1.9)
P 		1261
(2.1)
P 		643.3
(-3)
P 		729
C 953.4
(-0.4)
P 		1231.3
(1.8)
P 		1381.9
(3)
P 		927
(-0.6)
P 		867.8
(-1.1)
P 		625.9
(-3)
P 		756
avr 748.9
(-1.6) 		1334.9
(3) 		1281.8
(2.6) 		1129.2
(1.4) 		981.5
(0.2) 		569.4
(-3) 		766
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193030_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14582
Sequence Type Exemplar sequence
Representative Public ID R11H6.1 NCBI
Target Description R11H6.1 /REP_DB=WormBase Gene ID /WP=CE12770 /TR=O18000 /GB=CAB07646.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical 52.9 KD protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074209 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-9) (pes-9) mRNA, complete cds. 11/11 None
SNAP00000042446 ENSEMBL cdna:SNAP chromosome:CEL140:V:14598021:14599622:-1 11/11 None
GENEFINDER00000042454 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14598021:14599622:-1 11/11 None
R11H6.1.2 ENSEMBL cdna:known chromosome:CEL140:V:14597719:14599623:-1 gene:R11H6.1 11/11 None
R11H6.1.1 ENSEMBL cdna:known chromosome:CEL140:V:14597857:14599623:-1 gene:R11H6.1 11/11 None
R11H6.1.3 ENSEMBL cdna:known chromosome:CEL140:V:14597966:14599624:-1 gene:R11H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14598020-14599622(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical 52.9 KD protein like
Gene Symbol pes-9
Ensembl R11H6.1
Entrez Gene 179963 Entrez gene
SwissProt O18000 EMBL-EBI
WormBase CE12770 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603969_AT similar to Cytosolic nonspecific dipeptidase (Glutamate carboxypeptidase-like protein 1) (CNDP dipeptidase 2) cfa
CANINE:1587892_AT similar to Cytosolic nonspecific dipeptidase (Glutamate carboxypeptidase-like protein 1) (CNDP dipeptidase 2) cfa
CANINE_2:CFA.15359.1.S1_AT similar to Cytosolic nonspecific dipeptidase (Glutamate carboxypeptidase-like protein 1) (CNDP dipeptidase 2) cfa
CANINE_2:CFAAFFX.1018.1.S1_AT similar to Cytosolic nonspecific dipeptidase (Glutamate carboxypeptidase-like protein 1) (CNDP dipeptidase 2) cfa
CANINE_2:CFAAFFX.1018.1.S1_S_AT similar to Cytosolic nonspecific dipeptidase (Glutamate carboxypeptidase-like protein 1) (CNDP dipeptidase 2) cfa
DROSOPHILA_2:1629150_AT dm
DROSGENOME1:146652_AT dm
CHICKEN:GGAAFFX.11732.1.S1_AT CNDP dipeptidase 2 (metallopeptidase M20 family) gga
CHICKEN:GGAAFFX.8725.1.S1_S_AT CNDP dipeptidase 2 (metallopeptidase M20 family) gga
HG-U133_PLUS_2:217752_S_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
HG-U133A_2:217752_S_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
HG-U133A:217752_S_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
HU35KSUBA:AA349630_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
U133_X3P:G8922698_3P_A_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
HG-U95E:78775_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
U133_X3P:HS2.379558.1.S1_3P_X_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
U133_X3P:1562460_3P_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
HG-U133_PLUS_2:1562460_AT CNDP dipeptidase 2 (metallopeptidase M20 family) hs
MG-U74AV2:160349_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MU11KSUBA:AA109873_S_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MOE430A:1448263_A_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MOUSE430A_2:1448263_A_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MOUSE430_2:1448263_A_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MOE430A:1460177_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MOUSE430A_2:1460177_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
MOUSE430_2:1460177_AT CNDP dipeptidase 2 (metallopeptidase M20 family) mm
RG-U34B:RC_AI043964_S_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
RG-U34C:RC_AI168975_G_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
RG-U34C:H34730_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
RG-U34C:AA801349_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
RG-U34C:RC_AI168975_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
RAE230A:1372132_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
RAT230_2:1372132_AT CNDP dipeptidase 2 (metallopeptidase M20 family) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07646 Hypothetical protein R11H6.1 [Caenorhabditis elegans] ref|NP_506610.1| Patterned Expression Site family member (pes-9) [Caenorhabditis elegans] 0.0
blast CAE60868 Hypothetical protein CBG04579 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002933 EMBL-EBI Peptidase M20 9.3E-76
Sequence
Target Sequence 
>C. ELEGANS:193030_S_AT
tgctccattatcggctgctgaagaaaagacttatgatgatattgagttcgatgtggctga
gttccgcgacagtgttggagcttcaaagcttccaactgaagacaagaagacacttcttct
ccgtagatggcgcgagccgtcacttgcattccatggaattgagggagcattctatggacc
tggagagaagacagtaatcccttcaaaagtgatcggaaagttctcgatccgtattgtgcc
tgacatggatccagagcaagttaatcgtcttactgtagagtatctcaacaaagtatgggc
agaacgtggatcaccgaatgttttcaagccacgtccagggcacagtgctaagccgtgggt
tgttgacgtcaacgattccaacttcctcgccggagctcgggccatgaagcgtgtccatgg
tgttgaaccggatagaattcgcgaaggatgctccattccaatcactttgacattccaaga
gctcaccggaaaaagcgtacttcttctgccaatcggagcagctgacgatatggctcactc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCATTATCGGCTGCTGAAGAA 138 581 810 Antisense
AGTTCGATGTGGCTGAGTTCCGCGA 282 65 854 Antisense
GTTCCGCGACAGTGTTGGAGCTTCA 598 441 870 Antisense
AAAGTTCTCGATCCGTATTGTGCCT 277 123 1026 Antisense
TGTTTTCAAGCCACGTCCAGGGCAC 476 557 1128 Antisense
AGGGCACAGTGCTAAGCCGTGGGTT 276 59 1146 Antisense
GAAGCGTGTCCATGGTGTTGAACCG 178 343 1215 Antisense
ATGCTCCATTCCAATCACTTTGACA 279 43 1257 Antisense
CTTTGACATTCCAAGAGCTCACCGG 289 223 1274 Antisense
GAAAAAGCGTACTTCTTCTGCCAAT 42 355 1298 Antisense
AGCAGCTGACGATATGGCTCACTCA 662 75 1326 Antisense
Sequence Source Affymetrix Proprietary Database