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[193029_s_at] Drosophila translocation protein 1 like

Description C18E9.2 /REP_DB=WormBase Gene ID /WP=CE05294 /TR=Q18093 /GB=CAA93853.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Drosophila translocation protein 1 like
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 55      6grp_total > 70      4grp_total > 16      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 545
1 2 3 4 range
A 1333.8
(-3)
P 		1501.5
(-0.4)
P 		1502.3
(-0.4)
P 		1718.6
(3)
P 		385
B 1359.9
(-2.4)
P 		1308.9
(-3)
P 		1501.7
(-0.9)
P 		1853.4
(3)
P 		545
C 1341.2
(-2.7)
P 		1322.7
(-3)
P 		1617.8
(2.5)
P 		1644.8
(3)
P 		322
avr 1345
(-3) 		1377.7
(-2.5) 		1540.6
(-0) 		1738.9
(3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1030
1 2 3 4 5 6 range
A 1475
(-3)
P 		1481.1
(-3)
P 		1968.5
(0.3)
P 		2364.1
(3)
P 		1681.7
(-1.6)
P 		1520.7
(-2.7)
P 		889
B 1391
(-3)
P 		1420.3
(-2.7)
P 		1842.5
(1.7)
P 		1969.1
(3)
P 		1751.3
(0.7)
P 		1537.9
(-1.5)
P 		578
C 1409.1
(-3)
P 		1583.1
(-2)
P 		1899.5
(-0.1)
P 		2421.4
(3)
P 		1461.6
(-2.7)
P 		1719
(-1.2)
P 		1012
avr 1425
(-3) 		1494.8
(-2.5) 		1903.5
(0.5) 		2251.5
(3) 		1631.5
(-1.5) 		1592.5
(-1.8) 		827
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 485.6
(3)
P 		325.9
(-1.1)
P 		392.7
(0.6)
P 		251.6
(-3)
P 		234
B 433.7
(3)
P 		323.3
(-3)
P 		348
(-1.7)
P 		395
(0.9)
P 		110
C 444
(0.5)
P 		380.3
(-0.8)
P 		563.9
(3)
P 		277.3
(-3)
P 		287
avr 454.4
(3) 		343.2
(-1.6) 		434.9
(2.2) 		308
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 271.9
(-3)
P 		526.8
(1.7)
P 		428.7
(-0.1)
P 		599.6
(3)
P 		507.4
(1.3)
P 		370.2
(-1.2)
P 		328
B 484
(-2.2)
P 		472.7
(-2.4)
P 		447.4
(-3)
P 		521.6
(-1.3)
P 		711.5
(3)
P 		573.5
(-0.1)
P 		264
C 522.3
(-0.1)
P 		483.1
(-2.4)
P 		483.5
(-2.4)
P 		486.9
(-2.2)
P 		472.9
(-3)
P 		575.5
(3)
P 		103
avr 426.1
(-3) 		494.2
(-0) 		453.2
(-1.8) 		536
(1.8) 		563.9
(3) 		506.4
(0.5) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193029_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2684
Sequence Type Exemplar sequence
Representative Public ID C18E9.2 NCBI
Target Description C18E9.2 /REP_DB=WormBase Gene ID /WP=CE05294 /TR=Q18093 /GB=CAA93853.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Drosophila translocation protein 1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063507(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063507 NCBI Caenorhabditis elegans C18E9.2 (C18E9.2) mRNA, complete cds. 10/11 None
SNAP00000035641 ENSEMBL cdna:SNAP chromosome:CEL140:II:8965084:8966564:1 10/11 None
GENEFINDER00000035651 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8965084:8966564:1 10/11 None
C18E9.2 ENSEMBL cdna:known chromosome:CEL140:II:8964974:8966802:1 gene:C18E9.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8965080-8966561(+) 89.88 100.0
Public Domain and Genome References
Gene Title Drosophila translocation protein 1 like
Ensembl C18E9.2
Entrez Gene 174429 Entrez gene
SwissProt Q18093 EMBL-EBI
WormBase CE34703 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604169_AT similar to translocation protein 1 cfa
CANINE_2:CFA.1429.1.S1_AT similar to translocation protein 1 cfa
CANINE_2:CFA.17895.1.S1_S_AT similar to translocation protein 1 cfa
CANINE_2:CFAAFFX.8860.1.S1_S_AT similar to translocation protein 1 cfa
DROSOPHILA_2:1633100_A_AT Translocation protein 1 dm
DROSGENOME1:143663_AT Translocation protein 1 dm
CHICKEN:GGA.16350.1.S1_AT translocation protein 1 gga
CHICKEN:GGAAFFX.21474.1.S1_AT translocation protein 1 gga
HG-U95AV2:950_AT translocation protein 1 hs
HC-G110:950_AT translocation protein 1 hs
HG-U133A:208943_S_AT translocation protein 1 hs
HG-U133_PLUS_2:208943_S_AT translocation protein 1 hs
HG-FOCUS:208943_S_AT translocation protein 1 hs
HG-U133A_2:208943_S_AT translocation protein 1 hs
HG-U133A_2:208942_S_AT translocation protein 1 hs
HG-U133_PLUS_2:208942_S_AT translocation protein 1 hs
HG-U133A:208942_S_AT translocation protein 1 hs
HU35KSUBA:HUM_ALU_AT translocation protein 1 hs
HU35KSUBB:HUM_ALU_AT translocation protein 1 hs
HU35KSUBC:HUM_ALU_AT translocation protein 1 hs
HU35KSUBD:HUM_ALU_AT translocation protein 1 hs
HUGENEFL:HUM_ALU_AT translocation protein 1 hs
HC-G110:HUM_ALU_AT translocation protein 1 hs
HU35KSUBB:RC_AA031543_S_AT translocation protein 1 hs
HU35KSUBB:RC_R96306_AT translocation protein 1 hs
HUGENEFL:D87127_AT translocation protein 1 hs
U133_X3P:G1928972_3P_A_AT translocation protein 1 hs
U133_X3P:HS2.283326.1.S1_3P_S_AT translocation protein 1 hs
U133_X3P:HS.99532.0.S1_3P_AT translocation protein 1 hs
U133_X3P:HS.8146.0.A1_3P_A_AT translocation protein 1 hs
HG-U133_PLUS_2:1552789_AT translocation protein 1 hs
HG-U133_PLUS_2:1552790_A_AT translocation protein 1 hs
HG-U133_PLUS_2:225352_AT translocation protein 1 hs
HG-U133B:225352_AT translocation protein 1 hs
HG-U95AV2:38100_AT translocation protein 1 hs
HG-U95C:54182_AT translocation protein 1 hs
HG-U95D:83582_F_AT translocation protein 1 hs
HG-U95D:83583_R_AT translocation protein 1 hs
HG-U95E:91687_AT translocation protein 1 hs
HG-U133_PLUS_2:240308_AT Translocation protein 1 hs
HG-U133B:240308_AT Translocation protein 1 hs
HG-U95E:71889_AT Translocation protein 1 hs
U133_X3P:HS.292967.0.A1_3P_AT Translocation protein 1 hs
MOUSE430A_2:1455698_AT translocation protein 1 mm
MOE430A:1455698_AT translocation protein 1 mm
MOUSE430_2:1455698_AT translocation protein 1 mm
MU11KSUBA:AA239276_S_AT translocation protein 1 mm
MU11KSUBA:AA268226_G_AT translocation protein 1 mm
MU11KSUBA:AA268226_AT translocation protein 1 mm
MG-U74AV2:92531_AT translocation protein 1 mm
MG-U74AV2:99501_AT translocation protein 1 mm
MG-U74AV2:160136_R_AT translocation protein 1 mm
MG-U74BV2:162967_R_AT translocation protein 1 mm
MG-U74CV2:168883_AT translocation protein 1 mm
MOE430A:1454697_AT translocation protein 1 mm
MOUSE430A_2:1454697_AT translocation protein 1 mm
MOUSE430_2:1454697_AT translocation protein 1 mm
MOE430A:1432635_A_AT translocation protein 1 mm
MOUSE430A_2:1432635_A_AT translocation protein 1 mm
MOUSE430_2:1432635_A_AT translocation protein 1 mm
MOE430A:1433704_S_AT translocation protein 1 mm
MOUSE430A_2:1433704_S_AT translocation protein 1 mm
MOUSE430_2:1433704_S_AT translocation protein 1 mm
MOE430B:1444811_AT translocation protein 1 mm
MOUSE430_2:1444811_AT translocation protein 1 mm
MOE430B:1439233_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
MOUSE430_2:1439233_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
MG-U74BV2:165032_I_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
MU19KSUBA:TC19036_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
MU19KSUBB:TC28520_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
MU19KSUBB:TC31008_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
MU19KSUBB:TC31661_AT Translocation protein 1, mRNA (cDNA clone IMAGE:5347105) mm
RG-U34A:RC_AA893515_AT Translocation protein 1 (predicted) rn
RG-U34C:RC_AI136669_AT Translocation protein 1 (predicted) rn
RAE230A:1374188_AT Translocation protein 1 (predicted) rn
RAT230_2:1374188_AT Translocation protein 1 (predicted) rn
RAE230A:1398970_AT Translocation protein 1 (predicted) rn
RAT230_2:1398970_AT Translocation protein 1 (predicted) rn
RG-U34B:RC_AI043701_AT Translocation protein 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93853 Hypothetical protein C18E9.2 [Caenorhabditis elegans] ref|NP_495908.2| C18E9.2 [Caenorhabditis elegans] 1.0E-133
blast CAE59770 Hypothetical protein CBG03222 [Caenorhabditis briggsae] 1.0E-112
blast CAH93263 hypothetical protein [Pongo pygmaeus] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004728 EMBL-EBI Translocation protein Sec62 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495908.2 2 190-212,227-249
C18E9.2 2 190-212,227-249
SNAP00000035641 2 190-212,227-249
GENEFINDER00000035651 2 190-212,227-249
Sequence
Target Sequence 
>C. ELEGANS:193029_S_AT
cgatccaactcctctcatgaaaaagattattggagtacttatgcgtaagttttccctttt
tgatttgttatttcctgctttagaaatgattcaattcgtcggtacaattgtcggatgctt
gttccctctatggcctgtatggcttcgccaaggagtttattacgtatcaattactggaat
tggatgttttgcagctatcattgtcactgctatactccgtactattcttttcggaattat
ctacgctgttactttcggaaaacacaaactctgggttctgccgaacttgactgaagactg
tggagttcttgaatcattccaaccatggtatacttatgagtatgttggtgatgagaagaa
agaagctaagaaagataagaaagataaaaagtcgaaaaaagaaaaggattctgatgcaga
agaggaggagcaagaccacattgctgctgaacaggagcaaaaagaggaagaagacgatga
tgctgaaaaaaatagtcaggcatcaactgatgataattatgaaaaaattgaagacgagga
aatctctgctccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCCAACTCCTCTCATGAAAAAG 362 249 555 Antisense
TATGCGTAAGTTTTCCCTTTTTGAT 401 657 594 Antisense
ACAATTGTCGGATGCTTGTTCCCTC 544 115 658 Antisense
CCCTCTATGGCCTGTATGGCTTCGC 524 257 678 Antisense
GATGTTTTGCAGCTATCATTGTCAC 616 409 737 Antisense
TTATCTACGCTGTTACTTTCGGAAA 33 679 791 Antisense
AAACACAAACTCTGGGTTCTGCCGA 97 129 814 Antisense
GGTTCTGCCGAACTTGACTGAAGAC 352 507 828 Antisense
GGAGTTCTTGAATCATTCCAACCAT 419 517 856 Antisense
CAAGACCACATTGCTGCTGAACAGG 271 185 985 Antisense
AAGACGAGGAAATCTCTGCTCCACC 99 153 1085 Antisense
Sequence Source Affymetrix Proprietary Database