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[193027_s_at] Activin types I and II receptor domain

Description F55D12.5 /REP_DB=WormBase Gene ID /WP=CE05958 /TR=Q19659 /GB=CAA99864.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Activin types I and II receptor domain
Cluster 4grp_high_8_8 > 59      6grp_total > 39      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 126.3
(3)
P 		73.4
(-3)
P 		118
(2.1)
P 		79.8
(-2.3)
A 		53
B 99.4
(-1.4)
A 		132.5
(3)
P 		88.9
(-2.8)
A 		87.3
(-3)
P 		45
C 101.6
(0.4)
P 		118
(2)
A 		128.2
(3)
P 		67.6
(-3)
A 		61
avr 109.1
(2.5) 		108
(2.3) 		111.7
(3) 		78.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 75
(-1.6)
A 		136.1
(1.7)
P 		49.4
(-3)
A 		76.8
(-1.5)
A 		109.8
(0.3)
A 		159.3
(3)
M 		110
B 88.9
(-1.1)
M 		96.8
(0.1)
P 		77.4
(-3)
A 		99.9
(0.6)
A 		86.8
(-1.5)
P 		114.6
(3)
M 		37
C 142.4
(3)
P 		128
(2.1)
P 		80.6
(-0.8)
A 		43.7
(-3)
A 		140.4
(2.9)
P 		83.7
(-0.6)
A 		99
avr 102.1
(0.9) 		120.3
(3) 		69.1
(-3) 		73.5
(-2.5) 		112.3
(2.1) 		119.2
(2.9) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 46
(3)
P 		15.9
(-2.3)
P 		30.9
(0.4)
P 		11.7
(-3)
A 		34
B 31.7
(2.6)
A 		32.7
(3)
P 		20.6
(-2.1)
A 		18.6
(-3)
P 		14
C 33.6
(1)
P 		33.9
(1.1)
A 		44.7
(3)
P 		11.4
(-3)
A 		33
avr 37.1
(3) 		27.5
(0.5) 		32.1
(1.7) 		13.9
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.8
(-2.5)
A 		48.4
(3)
P 		10.7
(-3)
A 		19.5
(-1.6)
A 		33.1
(0.6)
A 		38.8
(1.5)
M 		38
B 30.9
(0)
M 		32.2
(0.4)
P 		18.8
(-3)
A 		26.4
(-1.1)
A 		35.3
(1.1)
P 		42.7
(3)
M 		24
C 52.8
(3)
P 		39.1
(1.1)
P 		20.5
(-1.4)
A 		8.8
(-3)
A 		45.4
(2)
P 		28
(-0.4)
A 		44
avr 32.5
(1.1) 		39.9
(3) 		16.7
(-3) 		18.2
(-2.6) 		37.9
(2.5) 		36.5
(2.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193027_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1977
Sequence Type Exemplar sequence
Representative Public ID F55D12.5 NCBI
Target Description F55D12.5 /REP_DB=WormBase Gene ID /WP=CE05958 /TR=Q19659 /GB=CAA99864.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Activin types I and II receptor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059782 NCBI Caenorhabditis elegans F55D12.5 (F55D12.5) mRNA, complete cds. 11/11 None
SNAP00000016631 ENSEMBL cdna:SNAP chromosome:CEL140:I:7915289:7917418:-1 11/11 None
GENEFINDER00000016636 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7915289:7917418:-1 11/11 None
F55D12.5 ENSEMBL cdna:known chromosome:CEL140:I:7914952:7922242:-1 gene:F55D12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7915219-7921994(-) 83.18 99.64
Public Domain and Genome References
Gene Title Activin types I and II receptor domain
Ensembl F55D12.5
Entrez Gene 3565799 Entrez gene
SwissProt Q19659 EMBL-EBI
WormBase CE36387 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4675 transmembrane receptor protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5024 transforming growth factor beta receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99864 Hypothetical protein F55D12.5 [Caenorhabditis elegans] emb|CAA99842.3| Hypothetical protein F55D12.5 [Caenorhabditis elegans] ref|NP_492183.2| F55D12.5 [Caenorhabditis elegans] 1.0E-180
blast CAA99864 Hypothetical protein F55D12.5 [Caenorhabditis elegans] emb|CAA99842.3| Hypothetical protein F55D12.5 [Caenorhabditis elegans] ref|NP_492183.2| F55D12.5 [Caenorhabditis elegans] 3.0E-69
blast CAA99864 Hypothetical protein F55D12.5 [Caenorhabditis elegans] emb|CAA99842.3| Hypothetical protein F55D12.5 [Caenorhabditis elegans] ref|NP_492183.2| F55D12.5 [Caenorhabditis elegans] 3.0E-66
blast CAE63722 Hypothetical protein CBG08247 [Caenorhabditis briggsae] 7.0E-40
blast CAE63722 Hypothetical protein CBG08247 [Caenorhabditis briggsae] 2.0E-21
blast CAE63722 Hypothetical protein CBG08247 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 6.6E-25
Sequence
Target Sequence 
>C. ELEGANS:193027_S_AT
gaccatttgatttgaatccgacacagaaaacagtacagaatgatcagatagttgaataca
atttttttgaaatttcgatcaacaacctgagtgcgattgtttatccaccgaagaactttg
tcaaagcaacaaaatcgacatcttcctcaactacaactacaaccaccaccactaccacta
ccaccacaactgaagctccaacaaccacaactacggagccaataatatatcctccagcaa
actttaaaaaggcgtcgaaaacgacaacttctacaactacggaaatgatatatacccttc
cagtggtaaaagaagaagatcagagtgaagagtatcagcaggagaacaggcaaatggttg
agatgccaaagatcgaacaatcggaagaagttgaagatgtggtaatgtatacaccaaaac
ctcctccatctcgacatttaccgaaaccatctgtccggacccccgcagagaaaatggatg
aatataagaagctcatcgagccgtccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCATTTGATTTGAATCCGACACA 601 383 1400 Antisense
TTCGATCAACAACCTGAGTGCGATT 158 695 1473 Antisense
GAGTGCGATTGTTTATCCACCGAAG 15 401 1488 Antisense
ATCCACCGAAGAACTTTGTCAAAGC 104 41 1502 Antisense
CAACAACCACAACTACGGAGCCAAT 703 189 1598 Antisense
AATATATCCTCCAGCAAACTTTAAA 412 173 1623 Antisense
GAAATGATATATACCCTTCCAGTGG 689 361 1681 Antisense
TCCTCCATCTCGACATTTACCGAAA 460 593 1821 Antisense
CATTTACCGAAACCATCTGTCCGGA 477 215 1834 Antisense
TCCGGACCCCCGCAGAGAAAATGGA 381 263 1853 Antisense
ATAAGAAGCTCATCGAGCCGTCCGC 450 25 1883 Antisense
Sequence Source Affymetrix Proprietary Database