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[193022_s_at] Zinc finger, C3HC4 type (RING finger) /// Zinc finger, C3HC4 type (RING finger)

Description Y45F10B.9 /REP_DB=WormBase Gene ID /WP=CE18407 /TR=O62463 /GB=CAA16350.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 05      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 6.9
(-2.7)
A 		4.9
(-2.9)
A 		4.4
(-3)
A 		59.2
(3)
A 		55
B 53.3
(3)
A 		30.5
(0.1)
A 		6
(-3)
A 		32.9
(0.4)
A 		47
C 29.6
(-1.8)
A 		53.1
(-0.8)
A 		2
(-3)
A 		140.2
(3)
P 		138
avr 29.9
(-0.9) 		29.5
(-0.9) 		4.1
(-3) 		77.4
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 34
(0.2)
A 		6.3
(-3)
A 		37.3
(0.6)
A 		19.5
(-1.5)
A 		58.1
(3)
A 		6.8
(-2.9)
A 		52
B 43.1
(3)
A 		31.5
(0.4)
A 		19.8
(-2.3)
A 		24.4
(-1.3)
A 		31.6
(0.4)
A 		16.8
(-3)
A 		26
C 26.6
(-0.7)
A 		66.1
(3)
A 		2.8
(-3)
A 		18.4
(-1.5)
A 		4.3
(-2.9)
A 		35.5
(0.1)
A 		63
avr 34.6
(3) 		34.6
(3) 		20
(-2.9) 		20.8
(-2.6) 		31.3
(1.7) 		19.7
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.5
(-1.9)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		8.7
(3)
A 		8
B 17
(3)
A 		7.5
(-0.7)
A 		1.4
(-3)
A 		7
(-0.8)
A 		16
C 9.8
(-0.6)
A 		15.3
(0.8)
A 		0.7
(-3)
A 		23.6
(3)
P 		23
avr 9.8
(1.4) 		8
(0.5) 		1.1
(-3) 		13.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.3
(-1.3)
A 		2.2
(-2.8)
A 		8.1
(-0.6)
A 		4.9
(-1.8)
A 		17.5
(3)
A 		1.7
(-3)
A 		16
B 15
(3)
A 		10.5
(0.4)
A 		4.8
(-3)
A 		6.5
(-2)
A 		12.8
(1.7)
A 		6.3
(-2.1)
A 		10
C 9.9
(-0.2)
A 		20.2
(3)
A 		0.7
(-3)
A 		3.7
(-2.1)
A 		1.4
(-2.8)
A 		11.9
(0.4)
A 		20
avr 10.4
(2.4) 		11
(3) 		4.5
(-3) 		5
(-2.5) 		10.6
(2.6) 		6.6
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8866
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.9 NCBI
Target Description Y45F10B.9 /REP_DB=WormBase Gene ID /WP=CE18407 /TR=O62463 /GB=CAA16350.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070214(11), NM_070223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070214 NCBI Caenorhabditis elegans Y45F10B.8 (Y45F10B.8) mRNA, complete cds. 11/11 None
NM_070223 NCBI Caenorhabditis elegans Y45F10B.9 (Y45F10B.9) mRNA, complete cds. 11/11 None
SNAP00000007855 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13577302:13578243:-1 11/11 None
SNAP00000007862 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13596941:13597882:-1 11/11 None
GENEFINDER00000007870 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13577302:13578243:-1 11/11 None
GENEFINDER00000007871 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13596941:13597882:-1 11/11 None
Y45F10B.8 ENSEMBL cdna:known chromosome:CEL140:IV:13577302:13578243:-1 gene:Y45F10B.8 11/11 None
Y45F10B.9 ENSEMBL cdna:known chromosome:CEL140:IV:13596941:13597882:-1 gene:Y45F10B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13596946-13597888(-) 100.0 100.0
chrIV:13577307-13578249(-) 99.59 99.59
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Zinc finger, C3HC4 type (RING finger)
Ensembl Y45F10B.8
Y45F10B.9
Entrez Gene 189918 Entrez gene
189919 Entrez gene
SwissProt O62464 EMBL-EBI
O62463 EMBL-EBI
WormBase CE18406 Wormbase
CE18407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 1.0E-137
blast CAA16350 Hypothetical protein Y45F10B.9 [Caenorhabditis elegans] ref|NP_502624.1| Y45F10B.9 [Caenorhabditis elegans] 1.0E-137
blast CAA16350 Hypothetical protein Y45F10B.9 [Caenorhabditis elegans] ref|NP_502624.1| Y45F10B.9 [Caenorhabditis elegans] 1.0E-136
blast CAA16351 Hypothetical protein Y45F10B.8 [Caenorhabditis elegans] ref|NP_502615.1| Y45F10B.8 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.9E-7
Sequence
Target Sequence 
>C. ELEGANS:193022_S_AT
gttgattccgtgaagcaagctttgatgaatcaacagatgatcacgcaacatttgaaaaaa
agaaacgaatatttggatgatttggaagaggcaaacgagaggatcaagattttggacgag
gaactcgacaaacttgaagcaaagatttcaaaaacggaggagtcacttgtacagtctgta
agcatgctgttggaaaaagatgaacaattgaagactatcagaaaagaaatgaaaattatg
gatgatgagagaagtgcgtttgaccaagaattgacgcgtttgaaaacgagcagacttgaa
aacgagaagagctctttggcgtcccgtgtggagtgcacaatttgctatctgagttatgac
aatgaagccagagtcccaagagttatgaaatgtggtcacacgatttgccatacatgtgtt
gatcggatcatcgaacagtcctttggatctccgaaatgcccatttgacagaaagataatg
ttcggactcttcacgacagacaatccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATTCCGTGAAGCAAGCTTTGA 71 437 205 Antisense
GGAGGAGTCACTTGTACAGTCTGTA 222 515 360 Antisense
GAGAGAAGTGCGTTTGACCAAGAAT 82 391 451 Antisense
GCGTCCCGTGTGGAGTGCACAATTT 134 293 523 Antisense
TGCACAATTTGCTATCTGAGTTATG 471 577 538 Antisense
GAAGCCAGAGTCCCAAGAGTTATGA 138 345 568 Antisense
TGGTCACACGATTTGCCATACATGT 40 553 597 Antisense
GATCGGATCATCGAACAGTCCTTTG 287 417 625 Antisense
GTCCTTTGGATCTCCGAAATGCCCA 413 475 642 Antisense
GATAATGTTCGGACTCTTCACGACA 258 423 678 Antisense
GACTCTTCACGACAGACAATCCATA 72 373 689 Antisense
Sequence Source Affymetrix Proprietary Database