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[193020_at] Yeast hypothetical protein YG15 like

Description F26H9.4 /REP_DB=WormBase Gene ID /WP=CE09709 /TR=SW:P91851 /GB=CAB04200.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YG15 like
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_high_8_8 > 11      6grp_highest_nonorm > 84      6grp_total > 98      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 612
1 2 3 4 range
A 584.9
(0.2)
P 		465.6
(-1.6)
P 		371.2
(-3)
P 		770.7
(3)
P 		400
B 594.4
(-0.2)
P 		426.1
(-1.9)
M 		310.4
(-3)
P 		922.7
(3)
P 		612
C 668.6
(2.9)
P 		416.7
(-3)
P 		484.7
(-1.4)
P 		674.7
(3)
P 		258
avr 616
(0.4) 		436.1
(-2.3) 		388.8
(-3) 		789.4
(3) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 586
1 2 3 4 5 6 range
A 662.4
(0.6)
P 		487
(-3)
P 		585.8
(-1)
P 		631.4
(-0)
P 		780.2
(3)
P 		666.7
(0.7)
P 		293
B 635.6
(-1.9)
P 		547.8
(-3)
P 		644.3
(-1.8)
P 		573.1
(-2.7)
P 		897.6
(1.4)
P 		1022.7
(3)
P 		475
C 567.3
(-1.5)
P 		564.5
(-1.5)
P 		436.4
(-3)
P 		587
(-1.3)
P 		670
(-0.3)
P 		964.2
(3)
P 		528
avr 621.8
(-1.5) 		533.1
(-3) 		555.5
(-2.6) 		597.2
(-1.9) 		782.6
(1.3) 		884.5
(3) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 213
(3)
P 		101.1
(-2.8)
P 		97
(-3)
P 		112.8
(-2.2)
P 		116
B 189.6
(2.7)
P 		105.2
(-1.4)
M 		71.9
(-3)
P 		196.6
(3)
P 		125
C 221.3
(3)
P 		119.8
(-2.7)
P 		168.9
(0.1)
P 		113.8
(-3)
P 		108
avr 208
(3) 		108.7
(-3) 		112.6
(-2.8) 		141.1
(-1) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 122.1
(-3)
P 		173.2
(-0.3)
P 		127.6
(-2.7)
P 		160.1
(-1)
P 		235.4
(3)
P 		162.3
(-0.9)
P 		113
B 221.1
(-1.2)
P 		182.3
(-2.2)
P 		156.5
(-2.9)
P 		151.8
(-3)
P 		364.7
(2.6)
P 		381.4
(3)
P 		230
C 210.3
(-0.2)
P 		172.3
(-1.3)
P 		111.1
(-3)
P 		118
(-2.8)
P 		216.8
(-0)
P 		322.8
(3)
P 		212
avr 184.5
(-1) 		175.9
(-1.3) 		131.7
(-3) 		143.3
(-2.6) 		272.3
(2.4) 		288.8
(3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.847
Sequence Type Exemplar sequence
Representative Public ID F26H9.4 NCBI
Target Description F26H9.4 /REP_DB=WormBase Gene ID /WP=CE09709 /TR=SW:P91851 /GB=CAB04200.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YG15 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060079 NCBI Caenorhabditis elegans F26H9.4 (F26H9.4) mRNA, complete cds. 11/11 None
SNAP00000021652 ENSEMBL cdna:SNAP chromosome:CEL140:I:9313974:9314942:-1 11/11 None
GENEFINDER00000021662 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9313974:9314942:-1 11/11 None
F26H9.4 ENSEMBL cdna:known chromosome:CEL140:I:9313974:9314942:-1 gene:F26H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9313904-9314873(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YG15 like
Ensembl F26H9.4
Entrez Gene 172754 Entrez gene
SwissProt P91851 EMBL-EBI
WormBase CE09709 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MG-U74BV2:164134_AT nicotinamide nucleotide adenylyltransferase 2 mm
MOE430B:1436155_AT nicotinamide nucleotide adenylyltransferase 2 mm
MOUSE430_2:1436155_AT nicotinamide nucleotide adenylyltransferase 2 mm
MU19KSUBB:TC27958_AT Nicotinamide nucleotide adenylyltransferase 2, mRNA (cDNA clone MGC:113818 IMAGE:30532596) mm
RAE230B:1394718_AT Nicotinamide nucleotide adenylyltransferase 2 (predicted) rn
RAT230_2:1394718_AT Nicotinamide nucleotide adenylyltransferase 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04200 Hypothetical protein F26H9.4 [Caenorhabditis elegans] ref|NP_492480.1| F26H9.4 [Caenorhabditis elegans] sp|P91851|YUG4_CAEEL Hypothetical protein F26H9.4 in chromosome I 1.0E-112
blast CAE72330 Hypothetical protein CBG19475 [Caenorhabditis briggsae] 3.0E-78
blast CAE69863 Hypothetical protein CBG16194 [Caenorhabditis briggsae] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 9.3E-50
Sequence
Target Sequence 
>C. ELEGANS:193020_AT
tacgtatgcttgaggtcgccaggtcacatctcgaaacgattaatacacaagttgttgaag
gaataatgagtcccgttgctgattcatacaacaataaaccaacgcttataaaatctaatt
ttcgcattcaaatggttcgagccgccacaaaaagttctgattggatacgagccgatgact
gggaatgtactcgaaccacgtggacaaggacaattgatgttcttagacatcatagagaac
ttgttcaggagaaatttggatcagacgtcggtatgatgttagtcgtcggaggtgacgtag
tagattcattcacaagaattcttcccgatggatcaaatctttggaattccagtgatattc
gaacgattataacagaatttggattaatagttttgtcacgggaaggatcgaatccattga
acacaattcaatcaatgcctgcaatttccgaattttgtgatagaataattcaagtgaaag
atgaagtgtgtcccagtggagttagttcaacacgtcttcgagccgcaattatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGTATGCTTGAGGTCGCCAGGTC 659 647 71 Antisense
TCGCCAGGTCACATCTCGAAACGAT 611 597 86 Antisense
TGAGTCCCGTTGCTGATTCATACAA 9 569 137 Antisense
TCAAATGGTTCGAGCCGCCACAAAA 61 629 198 Antisense
GGGAATGTACTCGAACCACGTGGAC 552 491 251 Antisense
GTCGGTATGATGTTAGTCGTCGGAG 301 473 337 Antisense
GAATTCTTCCCGATGGATCAAATCT 110 325 386 Antisense
GAACACAATTCAATCAATGCCTGCA 254 351 489 Antisense
AATGCCTGCAATTTCCGAATTTTGT 684 165 504 Antisense
GGAGTTAGTTCAACACGTCTTCGAG 182 517 568 Antisense
ACACGTCTTCGAGCCGCAATTATGA 548 109 580 Antisense
Sequence Source Affymetrix Proprietary Database