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[193018_s_at] Splicing factor-associated 32K chain

Description F59A2.3 /REP_DB=WormBase Gene ID /WP=CE17940 /TR=SW:Q21018 /GB=CAA84328.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Splicing factor-associated 32K chain
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 14      6grp_total > 24      4grp_total > 58      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8134
1 2 3 4 range
A 5499.3
(-0.4)
P 		8743.7
(2.5)
P 		9314.7
(3)
P 		2677.2
(-3)
P 		6638
B 5593.6
(-0.8)
P 		8788.3
(1.7)
P 		10536.1
(3)
P 		2681.3
(-3)
P 		7855
C 5745.9
(0.3)
P 		8111.2
(2.7)
P 		8443.9
(3)
P 		2402
(-3)
P 		6042
avr 5612.9
(-0.3) 		8547.7
(2.2) 		9431.6
(3) 		2586.8
(-3) 		6845

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2494
1 2 3 4 5 6 range
A 5018.5
(3)
P 		4748.4
(2.2)
P 		4359
(1.1)
P 		3101
(-2.4)
P 		2969.6
(-2.8)
P 		2883.8
(-3)
P 		2135
B 5095.1
(2.9)
P 		5144.4
(3)
P 		5112.4
(2.9)
P 		3869
(-0.3)
P 		2824.3
(-3)
P 		2909
(-2.8)
P 		2320
C 4571
(2.4)
P 		4799.3
(3)
P 		4135
(1.1)
P 		3151.1
(-1.6)
P 		2694.6
(-2.9)
P 		2650.8
(-3)
P 		2149
avr 4894.9
(3) 		4897.4
(3) 		4535.5
(2) 		3373.7
(-1.4) 		2829.5
(-3) 		2814.5
(-3) 		2083
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2551
1 2 3 4 range
A 2002.3
(1.7)
P 		1898
(1.4)
P 		2435
(3)
P 		391.9
(-3)
P 		2043
B 1783.8
(0.9)
P 		2170.5
(2.1)
P 		2441.5
(3)
P 		571.4
(-3)
P 		1870
C 1902.1
(0.5)
P 		2332
(1.6)
P 		2943
(3)
P 		405
(-3)
P 		2538
avr 1896.1
(1) 		2133.5
(1.7) 		2606.5
(3) 		456.1
(-3) 		2150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1139
1 2 3 4 5 6 range
A 925.1
(-1.6)
P 		1688.8
(3)
P 		949.3
(-1.5)
P 		786.5
(-2.5)
P 		896.1
(-1.8)
P 		702.1
(-3)
P 		987
B 1772.9
(3)
P 		1712.4
(2.5)
P 		1241.5
(-1.3)
P 		1024.8
(-3)
P 		1147.5
(-2)
P 		1084.8
(-2.5)
P 		748
C 1694.3
(3)
P 		1464.4
(1.7)
P 		1052.4
(-0.6)
P 		633.7
(-3)
P 		871.9
(-1.7)
P 		887.4
(-1.6)
P 		1061
avr 1464.1
(1.8) 		1621.9
(3) 		1081.1
(-1) 		815
(-3) 		971.8
(-1.8) 		891.4
(-2.4) 		807
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193018_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6932
Sequence Type Exemplar sequence
Representative Public ID F59A2.3 NCBI
Target Description F59A2.3 /REP_DB=WormBase Gene ID /WP=CE17940 /TR=SW:Q21018 /GB=CAA84328.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Splicing factor-associated 32K chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065300 NCBI Caenorhabditis elegans F59A2.3 (F59A2.3) mRNA, complete cds. 11/11 None
SNAP00000026713 ENSEMBL cdna:SNAP chromosome:CEL140:III:3396576:3397435:1 11/11 None
GENEFINDER00000026723 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3396576:3397435:1 11/11 None
F59A2.3.2 ENSEMBL cdna:known chromosome:CEL140:III:3396566:3397661:1 gene:F59A2.3 11/11 None
F59A2.3.1 ENSEMBL cdna:known chromosome:CEL140:III:3396569:3397661:1 gene:F59A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3396575-3397435(+) 100.0 100.0
Public Domain and Genome References
Gene Title Splicing factor-associated 32K chain
Ensembl F59A2.3
Entrez Gene 175441 Entrez gene
SwissProt Q21018 EMBL-EBI
WormBase CE17940 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17670.1.S1_AT similar to complement component 1, q subcomponent binding protein precursor cfa
CANINE_2:CFAAFFX.23829.1.S1_S_AT similar to complement component 1, q subcomponent binding protein precursor cfa
DROSOPHILA_2:1634572_AT dm
DROSGENOME1:154495_AT dm
CHICKEN:GGA.1355.1.S1_AT complement component 1, q subcomponent binding protein gga
HG-U133_PLUS_2:214214_S_AT complement component 1, q subcomponent binding protein hs
HG-U133A_2:214214_S_AT complement component 1, q subcomponent binding protein hs
HG-FOCUS:214214_S_AT complement component 1, q subcomponent binding protein hs
HG-U133A:214214_S_AT complement component 1, q subcomponent binding protein hs
HG-U133_PLUS_2:208910_S_AT complement component 1, q subcomponent binding protein hs
HG-U133A:208910_S_AT complement component 1, q subcomponent binding protein hs
HG-U133A_2:208910_S_AT complement component 1, q subcomponent binding protein hs
HUGENEFL:M69039_AT complement component 1, q subcomponent binding protein hs
U133_X3P:HS.78614.3.A1_3P_A_AT complement component 1, q subcomponent binding protein hs
HG-U95AV2:37668_AT complement component 1, q subcomponent binding protein hs
U133_X3P:HS2.434072.1.S1_3P_X_AT Complement component 1, q subcomponent binding protein hs
U133_X3P:1558719_3P_S_AT Complement component 1, q subcomponent binding protein hs
HG-U133_PLUS_2:1558719_S_AT Complement component 1, q subcomponent binding protein hs
HU35KSUBD:RC_AA281304_AT Complement component 1, q subcomponent binding protein hs
MU11KSUBA:AJ001101_S_AT complement component 1, q subcomponent binding protein mm
MU11KSUBB:MSA.17174.0_F_AT complement component 1, q subcomponent binding protein mm
MU11KSUBB:MSA.5443.0_S_AT complement component 1, q subcomponent binding protein mm
MG-U74AV2:96856_AT complement component 1, q subcomponent binding protein mm
MOE430A:1455821_X_AT complement component 1, q subcomponent binding protein mm
MOUSE430A_2:1455821_X_AT complement component 1, q subcomponent binding protein mm
MOUSE430_2:1455821_X_AT complement component 1, q subcomponent binding protein mm
MOE430A:1448274_AT complement component 1, q subcomponent binding protein mm
MOUSE430A_2:1448274_AT complement component 1, q subcomponent binding protein mm
MOUSE430_2:1448274_AT complement component 1, q subcomponent binding protein mm
MOE430B:1445887_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MOUSE430_2:1445887_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MG-U74AV2:96857_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MU11KSUBB:MSA.19787.0_F_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MU11KSUBB:MSA.19960.0_F_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MU19KSUBB:TC31342_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MU19KSUBC:TC38449_R_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
MU19KSUBC:TC38449_S_AT Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276) mm
RG-U34A:RC_AI178135_AT complement component 1, q subcomponent binding protein rn
RAE230A:1398784_AT complement component 1, q subcomponent binding protein rn
RAT230_2:1398784_AT complement component 1, q subcomponent binding protein rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5759 mitochondrial matrix inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84328 Hypothetical protein F59A2.3 [Caenorhabditis elegans] ref|NP_497701.1| F59A2.3 [Caenorhabditis elegans] sp|Q21018|YMI3_CAEEL Hypothetical protein F59A2.3 in chromosome III, mitochondrial precursor 1.0E-112
blast CAE65023 Hypothetical protein CBG09861 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003428 EMBL-EBI Mitochondrial glycoprotein 1.4E-112
Sequence
Target Sequence 
>C. ELEGANS:193018_S_AT
atttctcacaatcggccaaggttctgtcagtaacgccagaacttcaacaggccctgaacc
gtgagatcgaagccgagcaacagctgagcagcgacaatcttcaaggagccgttgcgccga
catttgctggcttccaagtcaccaataaggacgccgaagttaggctgaccaagaagaatg
gaagcgaagacattctcgtcgtcttcaatgtgaaccactctgtcgatatggacgaaggat
tcgacgatgagccatcccaggccgtcgctccagttccagtagccatgccaccattcaccg
tcgagattaccaagggagatcagagactttgcttccatctcgagcttgtgccagttgacg
atcaacctgatgagtatgatttccgcgtcgaagagttctacgtcgccccatctgccaaga
atggaaacgaggacgtaccatccgaggtgtacgctagcagtggaaaatatatcgatccag
acctccacgatctcctgttcgttcgttatttggaagaacgcggtctcgatgctcggttct
gcaagactctcgtcgcctatgccactcactacgagcactctcaatacgttggacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTCACAATCGGCCAAGGTTCT 628 15 95 Antisense
GACAATCTTCAAGGAGCCGTTGCGC 262 365 187 Antisense
ATTTGCTGGCTTCCAAGTCACCAAT 546 17 216 Antisense
CACCATTCACCGTCGAGATTACCAA 367 197 383 Antisense
TCAGAGACTTTGCTTCCATCTCGAG 424 621 414 Antisense
ATCTCGAGCTTGTGCCAGTTGACGA 492 31 431 Antisense
CCGCGTCGAAGAGTTCTACGTCGCC 286 261 477 Antisense
ACCATCCGAGGTGTACGCTAGCAGT 543 83 531 Antisense
CGATCTCCTGTTCGTTCGTTATTTG 303 249 582 Antisense
CTCGATGCTCGGTTCTGCAAGACTC 612 231 619 Antisense
GAGCACTCTCAATACGTTGGACTTC 13 391 667 Antisense
Sequence Source Affymetrix Proprietary Database