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[193017_at] Zinc finger, C3HC4 type (RING finger)

Description Y75B8A.10 /REP_DB=WormBase Gene ID /WP=CE23022 /TR=Q9XW86 /GB=CAA22083.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 05      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 61.3
(-1.6)
A 		40.6
(-3)
A 		103.6
(1.2)
A 		130.9
(3)
A 		90
B 14.8
(-3)
A 		91.7
(3)
A 		73.6
(1.6)
A 		50
(-0.3)
A 		77
C 67.4
(-2.6)
A 		94.5
(3)
A 		70.7
(-2)
A 		65.7
(-3)
A 		29
avr 47.8
(-3) 		75.6
(1.8) 		82.6
(3) 		82.2
(2.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 78.3
(3)
A 		56.7
(0.6)
A 		48.3
(-0.3)
P 		23.2
(-3)
A 		55.4
(0.5)
P 		23.3
(-3)
A 		55
B 98
(3)
P 		63.9
(-0.2)
P 		41.9
(-2.3)
A 		34.6
(-3)
A 		46.4
(-1.9)
M 		54.4
(-1.1)
A 		63
C 53.4
(-0.1)
A 		77.8
(1.9)
A 		19.3
(-3)
A 		90.4
(3)
A 		80.1
(2.1)
A 		41.5
(-1.1)
A 		71
avr 76.6
(3) 		66.1
(1.4) 		36.5
(-3) 		49.4
(-1.1) 		60.6
(0.6) 		39.7
(-2.5) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.3
(1.4)
A 		8.8
(-3)
A 		27.1
(3)
A 		19.2
(0.4)
A 		18
B 4.7
(-3)
A 		22.7
(3)
A 		17.1
(1.1)
A 		10.7
(-1)
A 		18
C 22.3
(1.2)
A 		27.2
(3)
A 		24.6
(2)
A 		11.1
(-3)
A 		16
avr 16.4
(-1.2) 		19.6
(0.8) 		22.9
(3) 		13.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.4
(0.6)
A 		20.2
(3)
A 		10.5
(-1)
P 		5.9
(-2.9)
A 		16.7
(1.6)
P 		5.7
(-3)
A 		15
B 34.1
(3)
P 		21.3
(-0.1)
P 		10.2
(-2.8)
A 		9.2
(-3)
A 		18.8
(-0.7)
M 		20.3
(-0.3)
A 		25
C 19.8
(1.3)
A 		23.7
(2.4)
A 		4.9
(-3)
A 		18.2
(0.8)
A 		25.9
(3)
A 		13.9
(-0.4)
A 		21
avr 22.8
(3) 		21.7
(2.5) 		8.5
(-3) 		11.1
(-1.9) 		20.5
(2) 		13.3
(-1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7270
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.10 NCBI
Target Description Y75B8A.10 /REP_DB=WormBase Gene ID /WP=CE23022 /TR=Q9XW86 /GB=CAA22083.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067182 NCBI Caenorhabditis elegans Y75B8A.10 (Y75B8A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000020173 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12171374:12182888:-1 11/11 None
SNAP00000020076 ENSEMBL cdna:SNAP chromosome:CEL140:III:12179048:12182888:-1 11/11 None
Y75B8A.10 ENSEMBL cdna:known chromosome:CEL140:III:12180835:12182888:-1 gene:Y75B8A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12180732-12182884(-) 92.59 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl Y75B8A.10
Entrez Gene 190702 Entrez gene
SwissProt Q9XW86 EMBL-EBI
WormBase CE28718 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22098 Hypothetical protein Y75B8A.9a [Caenorhabditis elegans] ref|NP_001022948.1| Y75B8A.9a [Caenorhabditis elegans] sp|Q7K755|GLT11_CAEEL Putative polypeptide N-acetylgalactosaminyltransferase 11 (Protein-UDP acetylgalactosaminyltransferase 11) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11) (pp-GaNTase 11) 0.0
blast CAE75097 Hypothetical protein CBG23019 [Caenorhabditis briggsae] 0.0
blast CAE47472 Hypothetical protein Y75B8A.9b [Caenorhabditis elegans] ref|NP_001022949.1| Y75B8A.9b [Caenorhabditis elegans] 0.0
blast CAA22083 Hypothetical protein Y75B8A.10 [Caenorhabditis elegans] ref|NP_499583.1| Y75B8A.10 [Caenorhabditis elegans] 1.0E-177
blast CAA22083 Hypothetical protein Y75B8A.10 [Caenorhabditis elegans] ref|NP_499583.1| Y75B8A.10 [Caenorhabditis elegans] 1.0E-174
blast CAH04641 Hypothetical protein B0564.11 [Caenorhabditis elegans] ref|NP_001021278.1| B0564.11 [Caenorhabditis elegans] 3.0E-66
blast CAH04641 Hypothetical protein B0564.11 [Caenorhabditis elegans] ref|NP_001021278.1| B0564.11 [Caenorhabditis elegans] 8.0E-66
blast CAE58655 Hypothetical protein CBG01824 [Caenorhabditis briggsae] 5.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.9E-25
Sequence
Target Sequence 
>C. ELEGANS:193017_AT
ccgccgcccaaggactatatgaagcttcttctgattctgccggtggaggaggcgagcgtc
caagtaatgccggaaaaatcgtatggtgcctttgagttgatgagaaaatttggaaaagat
gtgccgcaagcttcaattggatgtcccatcggattcacatgttccacgccaaaagcgatg
ctccggtgctcccatgttttctgtgaaacatgcttggccaccgcttccaagtgggatttc
gatggttgcccagtttgtagggctccagacaccgacttcatccgcctcaagctccgacat
ggcccttgtccgttcgacttgtgctgttccgatgaggattcaagtggcgttgtactgatt
ccatgcgggtgtcgggtaccatgtaaaaatctggaaatggcctatgacacagaaaagaac
aacatccaggcccttgtcgatttggttcgtgtttgcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCGCCCAAGGACTATATGAAGC 133 263 388 Antisense
GCCGCAAGCTTCAATTGGATGTCCC 486 285 510 Antisense
GTCCCATCGGATTCACATGTTCCAC 676 475 530 Antisense
GTTCCACGCCAAAAGCGATGCTCCG 330 441 548 Antisense
TCTGTGAAACATGCTTGGCCACCGC 511 607 587 Antisense
TGGCCACCGCTTCCAAGTGGGATTT 570 543 602 Antisense
GGATTTCGATGGTTGCCCAGTTTGT 648 509 621 Antisense
CGACTTGTGCTGTTCCGATGAGGAT 695 251 702 Antisense
AGTGGCGTTGTACTGATTCCATGCG 192 57 730 Antisense
TCCATGCGGGTGTCGGGTACCATGT 396 589 747 Antisense
TGTCGATTTGGTTCGTGTTTGCCCC 23 559 822 Antisense
Sequence Source Affymetrix Proprietary Database