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[193016_s_at] Iron-containing alcohol dehydrogenases

Description Y38F1A.6 /REP_DB=WormBase Gene ID /WP=CE24222 /TR=Q9U2M4 /GB=CAA21631.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Iron-containing alcohol dehydrogenases
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 65      6grp_total > 63      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3058
1 2 3 4 range
A 2052.8
(0.8)
P 		1386.2
(-0.8)
P 		3012.5
(3)
P 		423.5
(-3)
P 		2589
B 1855.5
(0.1)
P 		1265.1
(-1.1)
P 		3325.1
(3)
P 		303.8
(-3)
P 		3021
C 1908.2
(0.7)
P 		1337.3
(-0.6)
P 		2897.7
(3)
P 		267.6
(-3)
P 		2630
avr 1938.8
(0.5) 		1329.5
(-0.8) 		3078.4
(3) 		331.6
(-3) 		2747

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 683
1 2 3 4 5 6 range
A 1030
(-3)
P 		1255.7
(0.3)
P 		1437.8
(3)
P 		1261.4
(0.4)
P 		1184.6
(-0.7)
P 		1246.2
(0.2)
P 		408
B 989.5
(-2.7)
P 		955.5
(-3)
P 		1636.2
(3)
P 		1353.8
(0.5)
P 		1130.6
(-1.5)
P 		1261.5
(-0.3)
P 		681
C 1060.1
(-1.9)
P 		953.5
(-3)
P 		1533.4
(3)
P 		952.8
(-3)
P 		1336.5
(1)
P 		1357.7
(1.2)
P 		581
avr 1026.5
(-3) 		1054.9
(-2.7) 		1535.8
(3) 		1189.3
(-1.1) 		1217.2
(-0.8) 		1288.5
(0.1) 		509
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 965
1 2 3 4 range
A 747.4
(2.7)
P 		300.9
(-1)
P 		787.5
(3)
P 		62
(-3)
P 		726
B 591.7
(1.5)
P 		312.4
(-0.9)
P 		770.5
(3)
P 		64.7
(-3)
P 		706
C 631.7
(0.6)
P 		384.5
(-0.9)
P 		1009.9
(3)
P 		45.1
(-3)
P 		965
avr 656.9
(1.5) 		332.6
(-0.9) 		856
(3) 		57.3
(-3) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 189.9
(-3)
P 		446.6
(3)
P 		313.1
(-0.1)
P 		319.9
(0)
P 		357.5
(0.9)
P 		303.4
(-0.3)
P 		257
B 344.3
(-2)
P 		318.1
(-3)
P 		397.3
(0.1)
P 		358.6
(-1.4)
P 		459.4
(2.6)
P 		470.4
(3)
P 		152
C 392.9
(1.6)
P 		290.9
(-0.7)
P 		390.3
(1.5)
P 		191.6
(-3)
P 		432.5
(2.5)
P 		454.5
(3)
P 		263
avr 309
(-2.1) 		351.9
(-0.1) 		366.9
(0.6) 		290
(-3) 		416.5
(3) 		409.4
(2.7) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193016_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3704
Sequence Type Exemplar sequence
Representative Public ID Y38F1A.6 NCBI
Target Description Y38F1A.6 /REP_DB=WormBase Gene ID /WP=CE24222 /TR=Q9U2M4 /GB=CAA21631.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Iron-containing alcohol dehydrogenases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064363 NCBI Caenorhabditis elegans Y38F1A.6 (Y38F1A.6) mRNA, complete cds. 11/11 None
SNAP00000020282 ENSEMBL cdna:SNAP chromosome:CEL140:II:12994364:12996089:-1 11/11 None
GENEFINDER00000020293 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12994364:12996089:-1 11/11 None
Y38F1A.6.2 ENSEMBL cdna:known chromosome:CEL140:II:12994262:12996464:-1 gene:Y38F1A.6 11/11 None
Y38F1A.6.1 ENSEMBL cdna:known chromosome:CEL140:II:12994262:12996309:-1 gene:Y38F1A.6 11/11 None
Y38F1A.6.3 ENSEMBL cdna:known chromosome:CEL140:II:12994269:12996511:-1 gene:Y38F1A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12994360-12996086(-) 100.0 100.0
Public Domain and Genome References
Gene Title Iron-containing alcohol dehydrogenases
Ensembl Y38F1A.6
Entrez Gene 174942 Entrez gene
SwissProt Q9U2M4 EMBL-EBI
WormBase CE24222 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602528_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE:1593452_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE_2:CFA.14010.1.A1_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE_2:CFA.9585.1.A1_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
CANINE_2:CFAAFFX.11851.1.S1_AT similar to alcohol dehydrogenase, iron containing, 1 cfa
DROSOPHILA_2:1628907_AT Type III alcohol dehydrogenase dm
DROSGENOME1:143891_AT Type III alcohol dehydrogenase dm
CHICKEN:GGA.16991.2.S1_A_AT alcohol dehydrogenase, iron containing, 1 gga
HU35KSUBA:R63545_AT alcohol dehydrogenase, iron containing, 1 hs
HU35KSUBB:RC_R92768_AT alcohol dehydrogenase, iron containing, 1 hs
HU35KSUBB:RC_H48457_AT alcohol dehydrogenase, iron containing, 1 hs
U133_X3P:HS.184261.0.A1_3P_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U133_PLUS_2:227113_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U133B:227113_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U95B:44426_AT alcohol dehydrogenase, iron containing, 1 hs
HG-U95B:48601_AT alcohol dehydrogenase, iron containing, 1 hs
HU35KSUBD:RC_N39016_AT Alcohol dehydrogenase, iron containing, 1 hs
MG-U74BV2:108537_AT alcohol dehydrogenase, iron containing, 1 mm
MG-U74CV2:128834_R_AT alcohol dehydrogenase, iron containing, 1 mm
MOE430A:1424392_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430A_2:1424392_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430_2:1424392_AT alcohol dehydrogenase, iron containing, 1 mm
MOE430A:1424393_S_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430A_2:1424393_S_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430_2:1424393_S_AT alcohol dehydrogenase, iron containing, 1 mm
MOE430B:1444193_AT alcohol dehydrogenase, iron containing, 1 mm
MOUSE430_2:1444193_AT alcohol dehydrogenase, iron containing, 1 mm
MU19KSUBA:TC16926_AT Alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:37234 IMAGE:4972323) mm
MU19KSUBC:TC41391_AT Alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:37234 IMAGE:4972323) mm
MU19KSUBC:TC41391_G_AT Alcohol dehydrogenase, iron containing, 1, mRNA (cDNA clone MGC:37234 IMAGE:4972323) mm
RG-U34C:AA848389_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RG-U34C:AA942889_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RG-U34C:RC_AI072214_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAE230A:1389548_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAT230_2:1389548_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAE230B:1384073_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
RAT230_2:1384073_AT alcohol dehydrogenase, iron containing, 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21631 Hypothetical protein Y38F1A.6 [Caenorhabditis elegans] ref|NP_496764.1| Y38F1A.6 [Caenorhabditis elegans] 0.0
blast CAE59405 Hypothetical protein CBG02769 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001670 EMBL-EBI Iron-containing alcohol dehydrogenase 5.0E-40
Pfam IPR001670 EMBL-EBI Iron-containing alcohol dehydrogenase 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:193016_S_AT
tctccacgccctgagaatccaggagttcgtccactttatcaaggttccaacccgatcagt
gatgtctggagtaaagaggctttgagaatcattggaaaatacttccgccgttctatcttc
gatccaaccgacgaagaagctcgtacagaaatgctcaaggctagttcatttgctgggatt
ggattcggaaacgctggggttcatctttgccacggactctcctacccaatcagctcccag
gcgaaaagctgtgtggctgatgattatccaaaggagaagaacttgattccacatggactc
tctgtaatgacaaccgcagtggctgatttcgagtttacaactgccgcgtgcccagataga
catttgatttctgcacagactcttggtgcagatattccgaacaatgccagcaatgagtac
atttcccgaactctttgtgatcggctgagaggttatatgcgagactttggagttccaaat
ggactgaaaggaatgggattcgaattttctgatattgaaatgcttactgaagcagccagc
cactccgtcccaaatattgcaatctctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCACGCCCTGAGAATCCAGGAG 302 609 781 Antisense
GTTCGTCCACTTTATCAAGGTTCCA 30 441 805 Antisense
GTTCCAACCCGATCAGTGATGTCTG 461 439 824 Antisense
TGGAAAATACTTCCGCCGTTCTATC 622 547 873 Antisense
AAGGCTAGTTCATTTGCTGGGATTG 318 161 937 Antisense
GAAACGCTGGGGTTCATCTTTGCCA 13 359 968 Antisense
GATTCCACATGGACTCTCTGTAATG 609 433 1065 Antisense
GACAACCGCAGTGGCTGATTTCGAG 444 365 1089 Antisense
GATTTCGAGTTTACAACTGCCGCGT 517 427 1105 Antisense
CCGCGTGCCCAGATAGACATTTGAT 409 263 1124 Antisense
CCGTCCCAAATATTGCAATCTCTCC 493 265 1325 Antisense
Sequence Source Affymetrix Proprietary Database