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[193014_s_at]

Description C33F10.5A /REP_DB=WormBase Gene ID /WP=CE04138 /TR=Q18382 /GB=AAK31481.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=fibronectin, IG-like domains of NCAM
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 61      6grp_total > 02      4grp_total > 22      6grp_highest_sub > 02      6grp_cgc > 40      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 582.7
(3)
P 		325.1
(-1.5)
P 		238.3
(-3)
P 		552.2
(2.5)
P 		344
B 534.5
(3)
P 		326.2
(-0.7)
P 		197.4
(-3)
P 		461.8
(1.7)
P 		337
C 556.5
(3)
P 		328.4
(-1.8)
P 		271.1
(-3)
P 		538.4
(2.6)
P 		285
avr 557.9
(3) 		326.6
(-1.3) 		235.6
(-3) 		517.5
(2.2) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 501.6
(0.1)
P 		641.1
(3)
P 		356
(-3)
P 		537.8
(0.8)
P 		408.8
(-1.9)
P 		459
(-0.8)
P 		285
B 482.3
(0.5)
P 		587.4
(3)
P 		333.5
(-3)
P 		541.2
(1.9)
P 		384.9
(-1.8)
P 		371.8
(-2.1)
P 		254
C 408.8
(-1.3)
P 		641.1
(3)
P 		460.7
(-0.4)
P 		501.8
(0.4)
P 		320.1
(-3)
P 		329.6
(-2.8)
P 		321
avr 464.2
(-0.8) 		623.2
(3) 		383.4
(-2.7) 		526.9
(0.7) 		371.3
(-3) 		386.8
(-2.6) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 212.2
(3)
P 		70.6
(-2.7)
P 		62.3
(-3)
P 		80.8
(-2.3)
P 		150
B 170.5
(3)
P 		80.6
(-1.3)
P 		45.7
(-3)
P 		98.4
(-0.5)
P 		125
C 184.2
(3)
P 		94.4
(-2.8)
P 		94.5
(-2.8)
P 		90.8
(-3)
P 		93
avr 189
(3) 		81.9
(-2.3) 		67.5
(-3) 		90
(-1.9) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 92.5
(-2.4)
P 		228
(3)
P 		77.5
(-3)
P 		136.4
(-0.7)
P 		123.3
(-1.2)
P 		111.8
(-1.6)
P 		151
B 167.8
(1.5)
P 		195.5
(3)
P 		81
(-3)
P 		143.3
(0.3)
P 		156.4
(1)
P 		138.6
(0)
P 		115
C 151.5
(0.2)
P 		195.6
(3)
P 		117.3
(-2)
P 		100.9
(-3)
P 		103.6
(-2.8)
P 		110.3
(-2.4)
P 		95
avr 137.3
(-0.6) 		206.4
(3) 		91.9
(-3) 		126.9
(-1.2) 		127.8
(-1.1) 		120.2
(-1.5) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5841
Sequence Type Exemplar sequence
Representative Public ID C33F10.5A NCBI
Target Description C33F10.5A /REP_DB=WormBase Gene ID /WP=CE04138 /TR=Q18382 /GB=AAK31481.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=fibronectin, IG-like domains of NCAM
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170981(11), NM_001026843(11), NM_062460(11), NM_062461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170981 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-6) (rig-6) mRNA, complete cds. 11/11 None
NM_001026843 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-6) (rig-6) mRNA, complete cds. 11/11 None
NM_062460 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-6) (rig-6) mRNA, complete cds. 11/11 None
NM_062461 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-6) (rig-6) mRNA, complete cds. 11/11 None
SNAP00000016466 ENSEMBL cdna:SNAP chromosome:CEL140:II:4798263:4801789:-1 11/11 None
GENEFINDER00000016483 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4798263:4812475:-1 11/11 None
C33F10.5c ENSEMBL cdna:known chromosome:CEL140:II:4798146:4801020:-1 gene:C33F10.5 11/11 None
C33F10.5a ENSEMBL cdna:known chromosome:CEL140:II:4798263:4805663:-1 gene:C33F10.5 11/11 None
C33F10.5b ENSEMBL cdna:known chromosome:CEL140:II:4798263:4811882:-1 gene:C33F10.5 11/11 None
C33F10.5d ENSEMBL cdna:known chromosome:CEL140:II:4798263:4812125:-1 gene:C33F10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4798261-4805525(-) 99.07 100.0
Public Domain and Genome References
Ensembl C33F10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022014 neuRonal IGCAM family member (rig-6) [Caenorhabditis elegans] gb|AAU20850.1| Neuronal igcam protein 6, isoform d [Caenorhabditis elegans] 0.0
blast NP_740979 neuRonal IGCAM family member (rig-6) [Caenorhabditis elegans] gb|AAM98046.1| Neuronal igcam protein 6, isoform c [Caenorhabditis elegans] 0.0
blast NP_494861 neuRonal IGCAM family member (rig-6) [Caenorhabditis elegans] gb|AAK31482.1| Neuronal igcam protein 6, isoform b [Caenorhabditis elegans] 0.0
blast CAE73202 Hypothetical protein CBG20606 [Caenorhabditis briggsae] 0.0
blast NP_494862 neuRonal IGCAM family member (rig-6) [Caenorhabditis elegans] gb|AAK31481.1| Neuronal igcam protein 6, isoform a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-4
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-4
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-4
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-4
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-4
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.3E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494862.1 1 21-43
C33F10.5a 1 21-43
GENEFINDER00000016483 3 21-43,53-72,110-129
Sequence
Target Sequence 
>C. ELEGANS:193014_S_AT
ttgtgataccaaacacgccgttcaaataacctgtatcaatctatcgggatccgaaatctc
tgcaactgttgccagcgatcgaatattctggatgttgggtggactggaggcagaaactgc
ttacgattgtgatctaaaagcaatcgataatcatggcagtttcgggccggctagtaagaa
gttcagaattcacacgaaacagcatccaccgagtgaaacgccgttgatcgggaagttgat
gatgaaacagatgaaggatacctacactacaattctggaatggtcatccatcgaacttca
gaaaccgaatagaacagaaaatggatgtggatataaaatcttcatctacatatctgaaac
tgctactgaagcaattgagcttgacatgccactgcaacgtctttcggatcgtcggaatcc
atcggctcgtctagatggattgaagctgatgtacatgtacacaattaaagttgcaggata
taatcctggaggcatcggtcctatcagcgagcctcgaagtatacgactaggttccccggg
aaccatggattatacaactggaagctccgatgtaccaattccatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGATACCAAACACGCCGTTCAA 475 693 2283 Antisense
ATCGGGATCCGAAATCTCTGCAACT 356 35 2325 Antisense
TAATCATGGCAGTTTCGGGCCGGCT 409 635 2430 Antisense
ATTCACACGAAACAGCATCCACCGA 353 11 2470 Antisense
ATCCACCGAGTGAAACGCCGTTGAT 338 37 2486 Antisense
ATGGTCATCCATCGAACTTCAGAAA 271 51 2562 Antisense
GAGCTTGACATGCCACTGCAACGTC 273 389 2659 Antisense
TGCAACGTCTTTCGGATCGTCGGAA 12 575 2675 Antisense
TAATCCTGGAGGCATCGGTCCTATC 230 635 2763 Antisense
GGTCCTATCAGCGAGCCTCGAAGTA 318 501 2779 Antisense
AGCTCCGATGTACCAATTCCATCTC 75 81 2845 Antisense
Sequence Source Affymetrix Proprietary Database