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[193013_at] Yeast hypothetical protein YG5Y like

Description T02E1.7 /REP_DB=WormBase Gene ID /WP=CE13058 /TR=SW:O45731 /GB=CAB04659.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YG5Y like
Cluster 6grp_total > 88      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(-3)
A 		2.4
(-1.2)
A 		2.6
(-0.7)
A 		4.2
(3)
A 		3
B 5.2
(-1.6)
A 		2.7
(-3)
A 		13.5
(3)
A 		3.4
(-2.6)
A 		11
C 3
(0.2)
A 		3.9
(2.1)
A 		1.5
(-3)
A 		4.3
(3)
A 		3
avr 3.3
(-2.4) 		3
(-3) 		5.9
(3) 		4
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 2.8
(-3)
A 		2
(-3)
A 		6.7
(-2.9)
A 		8
(-2.9)
A 		86.3
(-1.1)
A 		261.9
(3)
P 		260
B 2.5
(-3)
A 		2
(-3)
A 		4.2
(-2.9)
A 		6.4
(-2.8)
A 		110.4
(1.1)
M 		161.4
(3)
P 		159
C 2.5
(-3)
A 		3.3
(-3)
A 		6.3
(-2.8)
A 		5.7
(-2.8)
A 		78.7
(1)
M 		116.3
(3)
P 		114
avr 2.6
(-3) 		2.4
(-3) 		5.7
(-2.9) 		6.7
(-2.9) 		91.8
(0) 		179.9
(3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(0)
A 		0.5
(-3)
A 		0.7
(3)
A 		0.6
(0)
A 		0
B 1.7
(-0.5)
A 		0.7
(-3)
A 		3.1
(3)
A 		0.7
(-3)
A 		2
C 1
(2)
A 		1.1
(3)
A 		0.5
(-3)
A 		0.7
(-1)
A 		1
avr 1.1
(0.4) 		0.8
(-2.1) 		1.4
(3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-3)
A 		1.5
(-2.9)
A 		2
(-2.9)
A 		26.1
(-0.6)
A 		63.8
(3)
P 		63
B 0.9
(-3)
A 		0.7
(-3)
A 		1
(-3)
A 		1.7
(-2.9)
A 		44.9
(1.5)
M 		60.2
(3)
P 		60
C 0.9
(-3)
A 		1
(-3)
A 		1.6
(-2.9)
A 		1.1
(-3)
A 		25.5
(0.9)
M 		38.9
(3)
P 		38
avr 0.8
(-3) 		0.8
(-3) 		1.4
(-2.9) 		1.6
(-2.9) 		32.2
(0.5) 		54.3
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1320
Sequence Type Exemplar sequence
Representative Public ID T02E1.7 NCBI
Target Description T02E1.7 /REP_DB=WormBase Gene ID /WP=CE13058 /TR=SW:O45731 /GB=CAB04659.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YG5Y like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059834 NCBI Caenorhabditis elegans T02E1.7 (T02E1.7) mRNA, complete cds. 11/11 None
SNAP00000000251 ENSEMBL cdna:SNAP chromosome:CEL140:I:8216950:8218566:-1 11/11 None
GENEFINDER00000000265 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8216950:8218379:-1 11/11 None
T02E1.7 ENSEMBL cdna:known chromosome:CEL140:I:8216950:8218765:-1 gene:T02E1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8216880-8218696(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YG5Y like
Ensembl T02E1.7
Entrez Gene 187988 Entrez gene
SwissProt O45731 EMBL-EBI
WormBase CE13058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04659 Hypothetical protein T02E1.7 [Caenorhabditis elegans] ref|NP_492235.1| T02E1.7 [Caenorhabditis elegans] sp|O45731|YFC7_CAEEL Hypothetical protein T02E1.7 in chromosome I 1.0E-144
blast CAB04659 Hypothetical protein T02E1.7 [Caenorhabditis elegans] ref|NP_492235.1| T02E1.7 [Caenorhabditis elegans] sp|O45731|YFC7_CAEEL Hypothetical protein T02E1.7 in chromosome I 1.0E-134
blast CAE60533 Hypothetical protein CBG04160 [Caenorhabditis briggsae] 1.0E-103
blast CAE60533 Hypothetical protein CBG04160 [Caenorhabditis briggsae] 2.0E-94
blast NP_508970 SurFeit homolog family member (sft-4) [Caenorhabditis elegans] gb|AAB00591.1| Surfeit homolog protein 4 [Caenorhabditis elegans] sp|Q18864|SURF4_CAEEL Surfeit locus protein 4 homolog 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002995 EMBL-EBI Surf4 protein 1.0E-126
Pfam IPR002995 EMBL-EBI Surf4 protein 1.0E-126
Pfam IPR002995 EMBL-EBI Surf4 protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492235.1 4 24-46,61-83,96-118,180-202
T02E1.7 4 24-46,61-83,96-118,180-202
SNAP00000000251 3 75-97,110-132,194-216
GENEFINDER00000000265 3 64-86,99-121,183-205
Sequence
Target Sequence 
>C. ELEGANS:193013_AT
tcactctttctcacgattgtcatgattatcaatctactattcggatcactttttgtcatg
atgagatataaagtcaccgaatcaagtgcggttcttggctttaccatcttcgcacaggtt
atcctctaccagctgtacactacttatcaccttctcactcgaaacatttcaatcgttgct
gcaattatgcttcttgttgccgagaacatgcttcgaaagccgaaaccagctaattacact
caattgccaagagatgagcacgagattgaggtaacatcggttctgctggctgcatgtcgt
gtctgcttgaacttgatgcttatttcaatggttcactttgatatgagctacactcgtatt
cttctctgtattatttcatacggaatgatgatattcgtatggttgggattcaagactcgt
atgatgagctttatgcttgctacctggctctttgcttataatattgtactcaacgacttt
tggaataaggatgctgaacttcatattattcgttacgacttcttccaaacactttctgca
attggaggtcttctccttcttattcatacgggccctggcgagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTCTTTCTCACGATTGTCATGA 21 627 208 Antisense
TACCATCTTCGCACAGGTTATCCTC 78 651 309 Antisense
CCAGCTGTACACTACTTATCACCTT 511 273 336 Antisense
TTATCACCTTCTCACTCGAAACATT 336 679 351 Antisense
TGAGGTAACATCGGTTCTGCTGGCT 678 567 474 Antisense
CATGTCGTGTCTGCTTGAACTTGAT 676 209 500 Antisense
TGAGCTACACTCGTATTCTTCTCTG 403 569 551 Antisense
ATGAGCTTTATGCTTGCTACCTGGC 173 45 631 Antisense
GCTACCTGGCTCTTTGCTTATAATA 455 303 646 Antisense
TTGGAGGTCTTCTCCTTCTTATTCA 204 707 749 Antisense
TATTCATACGGGCCCTGGCGAGTTT 627 659 768 Antisense
Sequence Source Affymetrix Proprietary Database