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[193012_at] serine/threonine protein phosphatase

Description C27B7.6 /REP_DB=WormBase Gene ID /WP=CE03035 /TR=SW:P48460 /GB=CAA90981.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 89      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 31.9
(-0.1)
A 		30.4
(-0.3)
A 		3.9
(-3)
A 		62.8
(3)
P 		59
B 27.2
(3)
A 		3.2
(-3)
A 		5.1
(-2.5)
A 		17.2
(0.5)
A 		24
C 24.2
(-1.4)
A 		26.6
(-0.9)
A 		17.1
(-3)
P 		44
(3)
P 		27
avr 27.8
(0.5) 		20.1
(-0.9) 		8.7
(-3) 		41.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 23.6
(-0.9)
A 		26.7
(-0.6)
A 		3.5
(-3)
A 		13.2
(-2)
A 		42.4
(1)
P 		62
(3)
A 		59
B 7
(-2.7)
A 		4.2
(-3)
A 		23.7
(-1)
A 		21.8
(-1.2)
A 		36.2
(0.3)
P 		61.8
(3)
P 		58
C 14.1
(-1.6)
A 		37.2
(1)
A 		6.3
(-2.5)
A 		1.9
(-3)
A 		36.5
(1)
P 		54.3
(3)
P 		52
avr 14.9
(-2.5) 		22.7
(-1.6) 		11.2
(-3) 		12.3
(-2.9) 		38.4
(0.4) 		59.4
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.6
(3)
A 		6.6
(0.2)
A 		1
(-3)
A 		9.2
(1.6)
P 		11
B 8.7
(3)
A 		0.8
(-3)
A 		1.2
(-2.7)
A 		3.7
(-0.8)
A 		8
C 8
(3)
A 		7.6
(1.9)
A 		5.9
(-3)
P 		7.4
(1.3)
P 		2
avr 9.4
(3) 		5
(-0.9) 		2.7
(-3) 		6.8
(0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.3
(-1.5)
A 		9.5
(0.7)
A 		0.8
(-3)
A 		3.3
(-2)
A 		12.8
(2)
P 		15.1
(3)
A 		14
B 2.4
(-2.7)
A 		1.4
(-3)
A 		5.8
(-1.8)
A 		5.8
(-1.8)
A 		14.7
(0.7)
P 		23.1
(3)
P 		22
C 5.2
(-1.4)
A 		11.3
(0.7)
A 		1.6
(-2.6)
A 		0.4
(-3)
A 		11.8
(0.8)
P 		18.2
(3)
P 		18
avr 4
(-2.5) 		7.4
(-1.2) 		2.7
(-3) 		3.2
(-2.8) 		13.1
(0.9) 		18.8
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9455
Sequence Type Exemplar sequence
Representative Public ID C27B7.6 NCBI
Target Description C27B7.6 /REP_DB=WormBase Gene ID /WP=CE03035 /TR=SW:P48460 /GB=CAA90981.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069146 NCBI Caenorhabditis elegans C27B7.6 (C27B7.6) mRNA, complete cds. 11/11 None
SNAP00000019244 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8903229:8906136:-1 11/11 None
GENEFINDER00000019251 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8903229:8905749:-1 11/11 None
C27B7.6 ENSEMBL cdna:known chromosome:CEL140:IV:8903229:8906136:-1 gene:C27B7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8903234-8906142(-) 97.02 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl C27B7.6
Entrez Gene 182956 Entrez gene
WormBase CE35412 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90981 Hypothetical protein C27B7.6 [Caenorhabditis elegans] ref|NP_501547.2| C27B7.6 [Caenorhabditis elegans] 0.0
blast T19505 hypothetical protein C27B7.6 - Caenorhabditis elegans 0.0
blast P48460 Putative serine/threonine protein phosphatase C27B7.6 in chromosome IV 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.0E-35
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.6E-23
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:193012_AT
agcgccttattattctggacacaattccaatttgggatcagttgctacaatcagtaaaag
tttgaaattgcgaatcgtgactctgaaacctaataagggatatgatcgctctaaattgga
caagagaactcttcacgatttcgaaaaaaactttcagccacttgatgagaatcctagaaa
aaacataagttgccaattcaatgttccaccaaacgggcagaaaatgtcaccatttcttgg
agaatactcgatgtttgcccatgaaacacagttttgtaagaaagacaatgagacacctgt
gaagaagccttatagctcaaaccaagatgaagatcattctgtattggacatgattcgcaa
gacacagaaaggatatggagtagaaccccagaagtcgggggccgcgccgaaggtgcggtc
cacggctggttttttatatgcgaagaagttttttcatgtttacaatatttccagagataa
agtcatgtctcttgaatcaatccgcaaaaaattgggaatgactactagtacgacgccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGCCTTATTATTCTGGACACAAT 129 83 861 Antisense
TTGCGAATCGTGACTCTGAAACCTA 309 701 928 Antisense
GGATATGATCGCTCTAAATTGGACA 152 511 958 Antisense
CAAGAGAACTCTTCACGATTTCGAA 574 183 981 Antisense
ACTTTCAGCCACTTGATGAGAATCC 170 103 1010 Antisense
TTCAATGTTCCACCAAACGGGCAGA 36 643 1057 Antisense
GAGAATACTCGATGTTTGCCCATGA 377 391 1100 Antisense
GAGACACCTGTGAAGAAGCCTTATA 456 393 1150 Antisense
GAAGCCTTATAGCTCAAACCAAGAT 365 343 1164 Antisense
GTCATGTCTCTTGAATCAATCCGCA 255 467 1342 Antisense
GAATGACTACTAGTACGACGCCGCC 404 331 1376 Antisense
Sequence Source Affymetrix Proprietary Database