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[193010_at] member of worm-specific protein family

Description C27C12.3 /REP_DB=WormBase Gene ID /WP=CE20532 /TR=Q93287 /GB=CAA93753.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster 6grp_total > 77      4grp_total > 41      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 7.4
(-2.3)
A 		37.8
(3)
A 		29.4
(1.5)
A 		3.2
(-3)
A 		35
B 15.9
(-3)
A 		57.6
(3)
A 		28.2
(-1.2)
A 		26.7
(-1.4)
A 		42
C 5.2
(-3)
A 		21.4
(-0.4)
A 		40.4
(2.7)
A 		42.4
(3)
A 		37
avr 9.5
(-3) 		38.9
(3) 		32.7
(1.7) 		24.1
(-0) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 9.4
(-2.4)
A 		2.5
(-3)
A 		11.8
(-2.2)
A 		27.8
(-0.7)
A 		15.3
(-1.8)
A 		68.5
(3)
P 		66
B 3.9
(-3)
A 		4.9
(-2.9)
A 		32.7
(0.1)
A 		5.2
(-2.9)
A 		26.8
(-0.6)
A 		60.3
(3)
A 		56
C 2.7
(-3)
A 		5.8
(-2.7)
A 		2.7
(-3)
A 		5.7
(-2.7)
A 		38.6
(0.8)
A 		58.9
(3)
P 		56
avr 5.3
(-2.9) 		4.4
(-3) 		15.7
(-1.8) 		12.9
(-2.1) 		26.9
(-0.7) 		62.6
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.7
(-1.3)
A 		8.2
(3)
A 		7.7
(2.6)
A 		0.5
(-3)
A 		8
B 5.1
(-3)
A 		14.2
(3)
A 		6.5
(-2.1)
A 		5.7
(-2.6)
A 		9
C 1.7
(-3)
A 		6.2
(-0.8)
A 		14.1
(3)
A 		7.2
(-0.3)
A 		12
avr 3.2
(-3) 		9.5
(3) 		9.4
(2.9) 		4.5
(-1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		0.9
(-3)
A 		2.6
(-2.4)
A 		7.1
(-0.6)
A 		4.6
(-1.6)
A 		16.7
(3)
P 		16
B 1.4
(-3)
A 		1.6
(-2.9)
A 		7.9
(-1.2)
A 		1.4
(-3)
A 		10.9
(-0.3)
A 		22.5
(3)
A 		21
C 1
(-2.9)
A 		1.8
(-2.7)
A 		0.7
(-3)
A 		1.2
(-2.8)
A 		12.5
(0.7)
A 		19.7
(3)
P 		19
avr 1.4
(-3) 		1.4
(-3) 		3.7
(-2.2) 		3.2
(-2.4) 		9.3
(-0.4) 		19.6
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17685
Sequence Type Exemplar sequence
Representative Public ID C27C12.3 NCBI
Target Description C27C12.3 /REP_DB=WormBase Gene ID /WP=CE20532 /TR=Q93287 /GB=CAA93753.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078066 NCBI Caenorhabditis elegans C27C12.3 (C27C12.3) mRNA, complete cds. 11/11 None
C27C12.3 ENSEMBL cdna:known chromosome:CEL140:X:14863595:14865761:-1 gene:C27C12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015875 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14864320-14865761(-) 100.0 100.0
Public Domain and Genome References
Gene Title member of worm-specific protein family
Ensembl C27C12.3
Entrez Gene 181582 Entrez gene
SwissProt Q93287 EMBL-EBI
WormBase CE20532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 0.0
blast CAA93748 Hypothetical protein F31F6.1 [Caenorhabditis elegans] ref|NP_510468.1| F31F6.1 [Caenorhabditis elegans] 1.0E-100
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:193010_AT
gagttctcgaagtggctcgcgaaactatgaactcttcagatatttcgccaaacaagaata
cgtcatcagttttgctggatggatcgccatcaaccatttggcctcccagtgattcgctgg
agttgcctcgttctattcagatgagaaagtgtgaaagagaaagtgtgaaagctgacactt
tttcaatgtcaggacaatctttcgatgacagaagctttgcaaagtccaagggaatgattg
cacagaatcttgcaatttctacaaccgtaggttctcagaaagatatccttcacagagaac
cagttaaaggaaacagcgtgcttgaagcatctacatgttcaactccaaagaaggacactt
caattgtcgactttggcacctacataaagaaccaggtgcaccaaacttctagcactatgc
gcaactcgagacgtcgaaagcttgctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCTCGAAGTGGCTCGCGAAAC 523 397 668 Antisense
GTGGCTCGCGAAACTATGAACTCTT 481 491 679 Antisense
TGAACTCTTCAGATATTTCGCCAAA 643 573 695 Antisense
AAGAATACGTCATCAGTTTTGCTGG 599 151 721 Antisense
TGGATCGCCATCAACCATTTGGCCT 159 551 747 Antisense
AGTTGCCTCGTTCTATTCAGATGAG 253 65 788 Antisense
AATCTTGCAATTTCTACAACCGTAG 270 169 913 Antisense
ATTGTCGACTTTGGCACCTACATAA 650 3 1030 Antisense
GAACCAGGTGCACCAAACTTCTAGC 29 347 1056 Antisense
AGCACTATGCGCAACTCGAGACGTC 396 77 1078 Antisense
TCGAGACGTCGAAAGCTTGCTGCCA 91 603 1093 Antisense
Sequence Source Affymetrix Proprietary Database