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[193008_at]

Description F23B2.2 /REP_DB=WormBase Gene ID /WP=CE09582 /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF). (HINXTON) TR:O02248 protein_id:CAB05182.1
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 42      6grp_total > 21      4grp_total > 61      6grp_highest_sub > 02_03      6grp_cgc > 62      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1189
1 2 3 4 range
A 1572.5
(3)
P 		966.3
(-1)
P 		1257.2
(0.9)
P 		672.2
(-3)
P 		900
B 1470.8
(1.9)
P 		1080.5
(-0.3)
P 		1662.7
(3)
P 		592.9
(-3)
P 		1070
C 1781.9
(3)
P 		1531.4
(1.7)
P 		1504.8
(1.6)
P 		594.3
(-3)
P 		1188
avr 1608.4
(3) 		1192.7
(0.5) 		1474.9
(2.2) 		619.8
(-3) 		989

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 852
1 2 3 4 5 6 range
A 565.5
(-3)
P 		1417.8
(3)
P 		895.6
(-0.7)
P 		965.1
(-0.2)
P 		583.8
(-2.9)
P 		575.7
(-2.9)
P 		852
B 849.5
(-2)
P 		1085.5
(1.1)
P 		1229.4
(3)
P 		895.1
(-1.4)
P 		773.6
(-3)
P 		804.8
(-2.6)
P 		456
C 1316.8
(3)
P 		922.8
(-0.6)
P 		1239.8
(2.3)
P 		667
(-3)
P 		1015.7
(0.2)
P 		756.2
(-2.2)
P 		650
avr 910.6
(-0.2) 		1142
(3) 		1121.6
(2.7) 		842.4
(-1.2) 		791
(-1.9) 		712.2
(-3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 572.5
(3)
P 		209.8
(-1.6)
P 		328.7
(-0.1)
P 		98.4
(-3)
P 		474
B 469
(3)
P 		266.8
(-0.5)
P 		385.3
(1.5)
P 		126.3
(-3)
P 		343
C 589.9
(3)
P 		440.3
(1.2)
P 		524.5
(2.2)
P 		100.2
(-3)
P 		490
avr 543.8
(3) 		305.6
(-0.3) 		412.8
(1.2) 		108.3
(-3) 		436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 104.2
(-3)
P 		504.2
(3)
P 		195
(-1.6)
P 		244.8
(-0.9)
P 		176.2
(-1.9)
P 		140.2
(-2.5)
P 		400
B 295.6
(-0.2)
P 		361.3
(3)
P 		298.5
(-0)
P 		237.1
(-3)
P 		314.3
(0.7)
P 		300.1
(0)
P 		124
C 488.1
(3)
P 		281.6
(-0.5)
P 		315.6
(0.1)
P 		134.1
(-3)
P 		328.7
(0.3)
P 		253.1
(-1)
P 		354
avr 296
(0.1) 		382.4
(3) 		269.7
(-0.8) 		205.3
(-3) 		273.1
(-0.7) 		231.1
(-2.1) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8916
Sequence Type Exemplar sequence
Representative Public ID F23B2.2 NCBI
Target Description F23B2.2 /REP_DB=WormBase Gene ID /WP=CE09582 /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF). (HINXTON) TR:O02248 protein_id:CAB05182.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171410(10), NM_171411(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171410 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 10/11 A 
NM_171411 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 10/11 A 
SNAP00000024638 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9126981:9129746:1 10/11 None
GENEFINDER00000024653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9127056:9129913:1 11/11 None
C01F6.6a ENSEMBL cdna:known chromosome:CEL140:IV:9119079:9130362:1 gene:C01F6.6 10/11 A 
C01F6.6b ENSEMBL cdna:known chromosome:CEL140:IV:9121366:9129913:1 gene:C01F6.6 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9127061-9127729(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-157
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-156
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-153
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-5
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Sequence
Target Sequence 
>C. ELEGANS:193008_AT
caagaaatgcgtttttgctacccctagttgtttttttagaaatgcaataatattcaacaa
ttatatattttttcagtcgaaagaaacaccagtgttcgttccaccaccacctccaccaac
cgacgctatgccatatttgcccagacttgctgaattgaacaaaggaaccccagatcaaga
atttggttttaatcttcatgctgaacgcggtcgcggacatttcattggaacagtcgatgc
aggaggaattggtgaaaaagctggacttgaagctggacagagaattgttggagtaaatgg
acaattaatttatccaactactggacacaaagaagttgttgctcttatcaagaaagatac
aatgaaaacaacacttttggttgcttcagaagatgttgataagtatcataaagatcataa
cattgcatattcatgggataatgttgaaagagttgatactcgtccagttattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAAATGCGTTTTTGCTACCCCT 624 183 57 Antisense
AGAAACACCAGTGTTCGTTCCACCA 533 69 138 Antisense
TATGCCATATTTGCCCAGACTTGCT 227 657 183 Antisense
TTTGCCCAGACTTGCTGAATTGAAC 625 667 192 Antisense
GAATTGAACAAAGGAACCCCAGATC 564 287 208 Antisense
TAATCTTCATGCTGAACGCGGTCGC 488 635 246 Antisense
CGGTCGCGGACATTTCATTGGAACA 255 243 264 Antisense
ATTGGAACAGTCGATGCAGGAGGAA 378 3 280 Antisense
GACAATTAATTTATCCAACTACTGG 674 363 356 Antisense
AACACTTTTGGTTGCTTCAGAAGAT 361 135 426 Antisense
GAGTTGATACTCGTCCAGTTATTAA 380 397 506 Antisense
Sequence Source Affymetrix Proprietary Database