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[193006_at]

Description T18H9.5 /REP_DB=WormBase Gene ID /WP=CE04973 /GEN=inx-10 /TR=SW:Q22549 /GB=AAA83332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=type-1 membrane protein
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 11      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 61      6grp_total > 13      4grp_total > 46      6grp_cgc > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 460.3
(3)
P 		332.3
(-1.9)
P 		321.1
(-2.3)
P 		303.2
(-3)
P 		157
B 504.7
(3)
P 		322.8
(-1.2)
P 		289.6
(-1.9)
P 		243.2
(-3)
P 		262
C 553.3
(3)
P 		293.9
(-2)
P 		241.5
(-3)
P 		313.9
(-1.6)
P 		312
avr 506.1
(3) 		316.3
(-2.1) 		284.1
(-3) 		286.8
(-2.9) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 376.4
(1.1)
P 		430.9
(3)
P 		414.3
(2.4)
P 		327.3
(-0.6)
P 		307.9
(-1.3)
P 		257.9
(-3)
P 		173
B 492.9
(3)
P 		395.9
(0.7)
P 		347
(-0.4)
P 		431.8
(1.6)
P 		284.2
(-1.9)
P 		236.1
(-3)
P 		257
C 484.4
(3)
P 		425.6
(1.7)
P 		399.8
(1.1)
P 		486.5
(3)
P 		323.1
(-0.6)
P 		213
(-3)
P 		274
avr 451.2
(3) 		417.5
(2.1) 		387
(1.2) 		415.2
(2) 		305.1
(-1.1) 		235.7
(-3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 167.6
(3)
P 		72.1
(-1.7)
P 		83.9
(-1.1)
P 		44.4
(-3)
P 		123
B 160.9
(3)
P 		79.7
(-1.5)
P 		67.1
(-2.2)
P 		51.8
(-3)
P 		109
C 183.1
(3)
P 		84.5
(-1.5)
P 		84.2
(-1.6)
P 		52.9
(-3)
P 		130
avr 170.5
(3) 		78.8
(-1.6) 		78.4
(-1.6) 		49.7
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 69.4
(-2.6)
P 		153.2
(3)
P 		90.2
(-1.2)
P 		83
(-1.7)
P 		92.9
(-1)
P 		62.8
(-3)
P 		90
B 171.5
(3)
P 		131.8
(0.3)
P 		84.3
(-3)
P 		114.4
(-0.9)
P 		115.4
(-0.9)
P 		88
(-2.7)
P 		87
C 179.5
(3)
P 		129.9
(0.2)
P 		101.8
(-1.3)
P 		97.8
(-1.5)
P 		104.5
(-1.2)
P 		71.3
(-3)
P 		108
avr 140.1
(3) 		138.3
(2.8) 		92.1
(-1.4) 		98.4
(-0.8) 		104.3
(-0.2) 		74
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11415
Sequence Type Exemplar sequence
Representative Public ID T18H9.5 NCBI
Target Description T18H9.5 /REP_DB=WormBase Gene ID /WP=CE04973 /GEN=inx-10 /TR=SW:Q22549 /GB=AAA83332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=type-1 membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028968 NCBI Caenorhabditis elegans INneXin family member (inx-10) (inx-10) mRNA, complete cds. 11/11 None
SNAP00000040413 ENSEMBL cdna:SNAP chromosome:CEL140:V:9207501:9209975:-1 11/11 None
GENEFINDER00000040418 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9207501:9209975:-1 11/11 None
T18H9.5a ENSEMBL cdna:known chromosome:CEL140:V:9207288:9209975:-1 gene:T18H9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028969 4/11 Cross Hyb Matching Probes None
T18H9.5b 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
188580 2 1 NM_001028968 193006_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9207500-9209975(-) 100.0 100.0
Public Domain and Genome References
Ensembl T18H9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83332 Innexin protein 10, isoform a [Caenorhabditis elegans] ref|NP_001024139.1| INneXin family member (inx-10) [Caenorhabditis elegans] sp|Q22549|INX10_CAEEL Innexin-10 0.0
blast CAE72131 Hypothetical protein CBG19227 [Caenorhabditis briggsae] 0.0
blast AAT81186 Innexin protein 10, isoform b [Caenorhabditis elegans] ref|NP_001024140.1| INneXin family member (inx-10) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024139.1 2 188-210,286-308
T18H9.5a 2 188-210,286-308
SNAP00000040413 2 188-210,286-308
GENEFINDER00000040418 2 188-210,286-308
Sequence
Target Sequence 
>C. ELEGANS:193006_AT
gacgcttcagtctggagtcatttttggaactgatcttgttcaagaactttggaggaactt
ccatggatcagaaccacaactgaaacgaagtaattccgctccaaaaattgaagaaagaga
acaatggtggcctgcatatccatcacttgtaaatccaattaatccatggagatatcgaga
tgaaaatcaagcaaatgctttgagatggagaagagctcttggagcaaatgttgataactc
tattgcaacacaagatttaatggagaagcttctaccacagaacgcacacatgagaccaag
tgacgatgagctattaaaccgacagccaattgcggttcaagcatcttatattgacgatga
atccgacggaaaattgaaaaacgaggagaagcagaatcaacaaaatgctactcaaccacc
ttactgttacacaaatcagaacccaactccctaccaaaatcaaaatcaaattcagaacca
aaaccagtattcaaattattatcgtacaccaagtctttcaagaggaacggatagccgtcc
tgtgtccactgcaactgacactgaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTTCAGTCTGGAGTCATTTTT 551 379 1092 Antisense
GGAACTTCCATGGATCAGAACCACA 602 529 1145 Antisense
TGGCCTGCATATCCATCACTTGTAA 494 543 1219 Antisense
GAGAAGCTTCTACCACAGAACGCAC 4 393 1354 Antisense
GACAGCCAATTGCGGTTCAAGCATC 67 369 1412 Antisense
TACTCAACCACCTTACTGTTACACA 479 645 1500 Antisense
TTACACAAATCAGAACCCAACTCCC 272 683 1518 Antisense
CAACTCCCTACCAAAATCAAAATCA 591 187 1535 Antisense
ATTATCGTACACCAAGTCTTTCAAG 643 13 1589 Antisense
AGGAACGGATAGCCGTCCTGTGTCC 354 55 1614 Antisense
GTCCACTGCAACTGACACTGACCAA 645 477 1635 Antisense
Sequence Source Affymetrix Proprietary Database