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[193005_s_at] ubiquitin carboxyl-termianl hydrolase

Description F30A10.10 /REP_DB=WormBase Gene ID /WP=CE09811 /TR=Q93371 /GB=CAB03026.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-termianl hydrolase
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 361.1
(3)
P 		242.3
(-0.8)
P 		171.7
(-3)
P 		243.8
(-0.7)
P 		189
B 358.1
(3)
P 		182.7
(-2.9)
P 		191.3
(-2.6)
P 		179.4
(-3)
P 		179
C 364.2
(3)
P 		123.6
(-3)
P 		211.6
(-0.8)
P 		213.8
(-0.8)
P 		241
avr 361.1
(3) 		182.9
(-3) 		191.5
(-2.7) 		212.3
(-2) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 399.9
(1.8)
P 		362.8
(1)
P 		180.9
(-3)
P 		279.2
(-0.8)
P 		382.7
(1.4)
P 		454.1
(3)
P 		273
B 318.3
(0.8)
P 		288.8
(-0.1)
P 		199.2
(-3)
P 		291.4
(-0.1)
P 		274.8
(-0.6)
P 		387.3
(3)
P 		188
C 354.3
(2.4)
P 		329.6
(0.2)
P 		298.5
(-2.7)
P 		302.7
(-2.3)
P 		295.4
(-3)
P 		360.3
(3)
P 		65
avr 357.5
(1.5) 		327.1
(0.5) 		226.2
(-3) 		291.1
(-0.8) 		317.6
(0.1) 		400.6
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 131.5
(3)
P 		52.6
(-1.9)
P 		44.9
(-2.4)
P 		35.7
(-3)
P 		96
B 114.2
(3)
P 		45.1
(-2.5)
P 		44.3
(-2.5)
P 		38.2
(-3)
P 		76
C 120.6
(3)
P 		35.5
(-3)
P 		73.7
(-0.3)
P 		36.1
(-3)
P 		85
avr 122.1
(3) 		44.4
(-2.5) 		54.3
(-1.8) 		36.7
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 73.7
(-0.7)
P 		129
(3)
P 		39.4
(-3)
P 		70.8
(-0.9)
P 		115.5
(2.1)
P 		110.6
(1.8)
P 		90
B 110.8
(0.9)
P 		96.1
(-0)
P 		48.4
(-3)
P 		77.2
(-1.2)
P 		111.7
(1)
P 		144.4
(3)
P 		96
C 131.3
(3)
P 		100.6
(0.4)
P 		76
(-1.7)
P 		60.9
(-3)
P 		95.6
(-0)
P 		120.6
(2.1)
P 		70
avr 105.3
(1.3) 		108.6
(1.6) 		54.6
(-3) 		69.6
(-1.7) 		107.6
(1.5) 		125.2
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193005_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2263
Sequence Type Exemplar sequence
Representative Public ID F30A10.10 NCBI
Target Description F30A10.10 /REP_DB=WormBase Gene ID /WP=CE09811 /TR=Q93371 /GB=CAB03026.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-termianl hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060123 NCBI Caenorhabditis elegans F30A10.10 (F30A10.10) mRNA, complete cds. 11/11 None
SNAP00000008712 ENSEMBL cdna:SNAP chromosome:CEL140:I:9517115:9518958:1 11/11 None
GENEFINDER00000008733 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9517190:9518958:1 11/11 None
F30A10.10 ENSEMBL cdna:known chromosome:CEL140:I:9514676:9519307:1 gene:F30A10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9514609-9518889(+) 97.56 100.0
Public Domain and Genome References
Gene Title ubiquitin carboxyl-termianl hydrolase
Ensembl F30A10.10
Entrez Gene 172782 Entrez gene
SwissProt Q93371 EMBL-EBI
WormBase CE32639 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6511 ubiquitin-dependent protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4221 ubiquitin thiolesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03026 Hypothetical protein F30A10.10 [Caenorhabditis elegans] emb|CAB02845.2| Hypothetical protein F30A10.10 [Caenorhabditis elegans] ref|NP_492524.2| F30A10.10 [Caenorhabditis elegans] 0.0
blast CAE56708 Hypothetical protein CBG24494 [Caenorhabditis briggsae] 0.0
blast CAG31198 hypothetical protein [Gallus gallus] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 3.5E-73
Sequence
Target Sequence 
>C. ELEGANS:193005_S_AT
aaagattcacacgtcgtcggtcttaccgaagaggaatggaacacgtttcttacagaaata
aggaaacttgaagaagctggtgatgatcaatcgattgcggtagatccttgtccaatcccc
attgaaaatggtcaaattgtggacatgtgcgaaaagtgttttgagcaacatataaagttc
actgaagaacagaaatacatgtttgaaaatgagaatatatatgtgaaacttgtgaatttg
aatgtcgaggaagatattgcgaaggcgaatgggaaagctagaagaggacgagctaagaac
ttgtatgctataaagatgtcctcgacgaataagctgatggagctgaaagttcaattgtat
gataaaacacaccaattaccaaacgatcaactattgtatcgtacagccggcggtgaacag
tttgatgttagcaacaatcagaaaacattgttcgatcttcgtctttctccaaataataac
gataatcctctcatcctgattgctcaacagttttctccatctgcgtctcaagctgatgaa
act

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATTCACACGTCGTCGGTCTTA 214 121 3112 Antisense
ATCGATTGCGGTAGATCCTTGTCCA 266 35 3201 Antisense
TCCTTGTCCAATCCCCATTGAAAAT 26 591 3216 Antisense
GTATGCTATAAAGATGTCCTCGACG 4 455 3414 Antisense
AACACACCAATTACCAAACGATCAA 78 135 3477 Antisense
TTGTATCGTACAGCCGGCGGTGAAC 642 685 3505 Antisense
AACATTGTTCGATCTTCGTCTTTCT 497 137 3555 Antisense
GATCTTCGTCTTTCTCCAAATAATA 275 419 3565 Antisense
CTCTCATCCTGATTGCTCAACAGTT 382 231 3599 Antisense
TTGCTCAACAGTTTTCTCCATCTGC 564 703 3611 Antisense
ATCTGCGTCTCAAGCTGATGAAACT 28 35 3630 Antisense
Sequence Source Affymetrix Proprietary Database