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[193004_at] possible G protein coupled receptor

Description F59B2.13 /REP_DB=WormBase Gene ID /WP=CE00609 /TR=SW:P34488 /GB=CAA77580.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=possible G protein coupled receptor
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 34      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 81      6grp_total > 11      4grp_total > 22      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 394.2
(2.3)
P 		190.9
(-1.9)
P 		140.2
(-3)
P 		429.1
(3)
P 		289
B 427.4
(3)
P 		198.5
(-2.3)
P 		166.6
(-3)
P 		423.7
(2.9)
P 		261
C 404.2
(1.8)
P 		219
(-1.2)
P 		112.9
(-3)
P 		473.9
(3)
P 		361
avr 408.6
(2.3) 		202.8
(-1.8) 		139.9
(-3) 		442.2
(3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 330.4
(3)
P 		314.9
(1.9)
P 		312.7
(1.7)
P 		251.9
(-2.8)
P 		250.3
(-2.9)
P 		249.2
(-3)
P 		81
B 271.1
(-0.6)
P 		370
(3)
P 		271.2
(-0.6)
P 		245.1
(-1.6)
P 		207.4
(-3)
P 		270.7
(-0.7)
P 		163
C 249.3
(-1)
P 		333.4
(3)
P 		238.9
(-1.5)
P 		301.9
(1.5)
P 		208.1
(-3)
P 		273
(0.1)
P 		125
avr 283.6
(0.2) 		339.4
(3) 		274.3
(-0.3) 		266.3
(-0.7) 		221.9
(-3) 		264.3
(-0.8) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 143.5
(3)
P 		41.4
(-2.7)
P 		36.7
(-3)
P 		62.8
(-1.5)
P 		107
B 136.3
(3)
P 		49
(-2.4)
P 		38.6
(-3)
P 		90.3
(0.2)
P 		98
C 133.8
(3)
P 		63
(-1.5)
P 		39.3
(-3)
P 		79.9
(-0.4)
P 		95
avr 137.9
(3) 		51.1
(-2.2) 		38.2
(-3) 		77.7
(-0.6) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 60.9
(-3)
P 		112
(3)
P 		68.1
(-2.1)
P 		63.9
(-2.6)
P 		75.5
(-1.3)
P 		60.7
(-3)
P 		51
B 94.3
(0)
P 		123.2
(3)
P 		65.8
(-2.9)
P 		64.9
(-3)
P 		84.3
(-1)
P 		100.9
(0.7)
P 		58
C 92.4
(1.6)
P 		101.7
(3)
P 		60.8
(-3)
P 		60.7
(-3)
P 		67.3
(-2)
P 		91.4
(1.5)
P 		41
avr 82.5
(-0.6) 		112.3
(3) 		64.9
(-2.8) 		63.2
(-3) 		75.7
(-1.5) 		84.3
(-0.4) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7174
Sequence Type Exemplar sequence
Representative Public ID F59B2.13 NCBI
Target Description F59B2.13 /REP_DB=WormBase Gene ID /WP=CE00609 /TR=SW:P34488 /GB=CAA77580.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=possible G protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066598 NCBI Caenorhabditis elegans F59B2.13 (F59B2.13) mRNA, complete cds. 11/11 None
SNAP00000012582 ENSEMBL cdna:SNAP chromosome:CEL140:III:9024983:9026886:-1 11/11 None
GENEFINDER00000012591 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9024983:9026949:-1 11/11 None
F59B2.13 ENSEMBL cdna:known chromosome:CEL140:III:9023868:9028851:-1 gene:F59B2.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9024978-9028847(-) 97.7 100.0
Public Domain and Genome References
Gene Title possible G protein coupled receptor
Ensembl F59B2.13
Entrez Gene 186597 Entrez gene
SwissProt P34488 EMBL-EBI
WormBase CE37246 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA77580 Hypothetical protein F59B2.13 [Caenorhabditis elegans] ref|NP_498999.2| F59B2.13 [Caenorhabditis elegans] sp|P34488|YMJC_CAEEL Putative G-protein coupled receptor F59B2.13 0.0
blast CAA77580 Hypothetical protein F59B2.13 [Caenorhabditis elegans] ref|NP_498999.2| F59B2.13 [Caenorhabditis elegans] sp|P34488|YMJC_CAEEL Putative G-protein coupled receptor F59B2.13 1.0E-180
blast CAE62675 Hypothetical protein CBG06817 [Caenorhabditis briggsae] 1.0E-170
blast CAE62675 Hypothetical protein CBG06817 [Caenorhabditis briggsae] 1.0E-164
blast CAA77580 Hypothetical protein F59B2.13 [Caenorhabditis elegans] ref|NP_498999.2| F59B2.13 [Caenorhabditis elegans] sp|P34488|YMJC_CAEEL Putative G-protein coupled receptor F59B2.13 1.0E-148
blast CAE62675 Hypothetical protein CBG06817 [Caenorhabditis briggsae] 1.0E-139
blast AAB65319 Hypothetical protein F40A3.7 [Caenorhabditis elegans] ref|NP_505034.1| F40A3.7 [Caenorhabditis elegans] 3.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498999.2 7 119-141,154-176,196-218,237-259,308-330,362-384,394-416
F59B2.13 7 119-141,154-176,196-218,237-259,308-330,362-384,394-416
SNAP00000012582 7 10-32,45-67,72-91,104-126,175-197,229-251,261-283
GENEFINDER00000012591 7 32-54,67-89,109-131,150-172,221-243,275-297,307-329
Sequence
Target Sequence 
>C. ELEGANS:193004_AT
aatcattgttgtcaccactttcatcctcacttcctacaatcacgtgagccatgcttgtgc
tgaaaagctcttttgtaatggcacacaataccacgtggcttgtttgggaattgattccga
acgttggttccggaatgagccaaatcccaactctgaatttatgaagtctgttgtccgtgt
agctcctcaagttaatgcaattttcgttgtgctcattccagtggttctcgtgattatatt
caatgtcatgcttattttgacgttgaggcaaagaacaaagttatttgaaccatcaaaaac
tattcgaggagattcacagtttacccagcttcaatcaaaaacagaacataaagtgacaat
cacagttacagcaattgtgacgtgtttcacaataactcagagtccatcagcatttgtcac
atttctcagttcctacgtccacagggattgggttacactgagtgcaatctgcacaattct
ggttgtacttggcaaagccttaaactttgttctcttctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATTGTTGTCACCACTTTCATC 232 171 744 Antisense
ATCCTCACTTCCTACAATCACGTGA 435 39 766 Antisense
ATCACGTGAGCCATGCTTGTGCTGA 33 29 782 Antisense
GGCACACAATACCACGTGGCTTGTT 301 533 823 Antisense
GGAATGAGCCAAATCCCAACTCTGA 667 531 875 Antisense
ATGAAGTCTGTTGTCCGTGTAGCTC 229 45 904 Antisense
TGCTCATTCCAGTGGTTCTCGTGAT 380 581 953 Antisense
GAGGAGATTCACAGTTTACCCAGCT 291 403 1049 Antisense
GAGTCCATCAGCATTTGTCACATTT 236 401 1143 Antisense
TCAGTTCCTACGTCCACAGGGATTG 632 603 1169 Antisense
GCCTTAAACTTTGTTCTCTTCTGTC 140 265 1240 Antisense
Sequence Source Affymetrix Proprietary Database