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[193003_at] ribosomal protein L7/L12 mitochondrial

Description W09D10.3 /REP_DB=WormBase Gene ID /WP=CE16564 /TR=O18180 /GB=CAB07857.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ribosomal protein L7-L12 mitochondrial
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 31      6grp_total > 22      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1627
1 2 3 4 range
A 1498.8
(1.2)
P 		1416.3
(0.9)
P 		1883.8
(3)
P 		569.2
(-3)
P 		1315
B 1330.9
(0.1)
P 		1989.7
(2.8)
P 		2034.2
(3)
P 		581.4
(-3)
P 		1453
C 1815.7
(1.7)
P 		2174.9
(3)
P 		1985.2
(2.3)
P 		548.4
(-3)
P 		1627
avr 1548.5
(1.2) 		1860.3
(2.5) 		1967.7
(3) 		566.3
(-3) 		1401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 757
1 2 3 4 5 6 range
A 886.2
(-0.7)
P 		1340.2
(3)
P 		1168.6
(1.6)
P 		984.2
(0.1)
P 		597.5
(-3)
P 		627.9
(-2.8)
P 		743
B 1190.6
(2.8)
P 		1208.3
(3)
P 		974.6
(0.6)
P 		919.2
(0.1)
P 		685.3
(-2.3)
P 		616.6
(-3)
P 		592
C 1274.9
(2.4)
P 		1354.6
(3)
P 		1173.5
(1.6)
P 		987.3
(0.1)
P 		645.7
(-2.6)
P 		600.5
(-3)
P 		754
avr 1117.2
(1.4) 		1301
(3) 		1105.6
(1.3) 		963.6
(0) 		642.8
(-2.8) 		615
(-3) 		686
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 609
1 2 3 4 range
A 545.7
(3)
P 		307.4
(-0.1)
P 		492.5
(2.3)
P 		83.3
(-3)
P 		462
B 424.4
(1.9)
P 		491.4
(3)
P 		471.4
(2.7)
P 		123.9
(-3)
P 		368
C 601
(2.1)
P 		625.3
(2.3)
P 		691.9
(3)
P 		92.5
(-3)
P 		599
avr 523.7
(2.6) 		474.7
(2) 		551.9
(3) 		99.9
(-3) 		452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 163.4
(-2.8)
P 		476.6
(3)
P 		254.5
(-1.1)
P 		249.6
(-1.2)
P 		180.3
(-2.5)
P 		152.9
(-3)
P 		324
B 414.3
(3)
P 		402.2
(2.6)
P 		236.7
(-2.8)
P 		243.5
(-2.6)
P 		278.4
(-1.4)
P 		229.9
(-3)
P 		184
C 472.5
(3)
P 		413.3
(1.7)
P 		298.7
(-0.8)
P 		198.6
(-3)
P 		208.9
(-2.8)
P 		201
(-2.9)
P 		274
avr 350.1
(1) 		430.7
(3) 		263.3
(-1.3) 		230.6
(-2.1) 		222.5
(-2.3) 		194.6
(-3) 		236
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7070
Sequence Type Exemplar sequence
Representative Public ID W09D10.3 NCBI
Target Description W09D10.3 /REP_DB=WormBase Gene ID /WP=CE16564 /TR=O18180 /GB=CAB07857.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ribosomal protein L7-L12 mitochondrial
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066959 NCBI Caenorhabditis elegans W09D10.3 (W09D10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000014531 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10706622:10708271:1 11/11 None
SNAP00000014511 ENSEMBL cdna:SNAP chromosome:CEL140:III:10707644:10708271:1 11/11 None
W09D10.3 ENSEMBL cdna:known chromosome:CEL140:III:10707638:10708845:1 gene:W09D10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10707639-10708267(+) 100.0 100.0
Public Domain and Genome References
Gene Title ribosomal protein L7/L12 mitochondrial
Ensembl W09D10.3
Entrez Gene 176495 Entrez gene
SwissProt O18180 EMBL-EBI
WormBase CE16564 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20414_AT ribosomal protein L12 family protein at
ATH1-121501:246210_AT ribosomal protein L12 family protein at
CANINE_2:CFA.21392.1.S1_AT similar to 39S ribosomal protein L12, mitochondrial precursor (L12mt) (MRP-L12) (5c5-2) cfa
CANINE_2:CFAAFFX.9670.1.S1_S_AT similar to 39S ribosomal protein L12, mitochondrial precursor (L12mt) (MRP-L12) (5c5-2) cfa
DROSOPHILA_2:1631718_AT mitochondrial ribosomal protein L12 dm
DROSGENOME1:142454_AT mitochondrial ribosomal protein L12 dm
HG-FOCUS:203931_S_AT mitochondrial ribosomal protein L12 hs
HG-U133A:203931_S_AT mitochondrial ribosomal protein L12 hs
HG-U133_PLUS_2:203931_S_AT mitochondrial ribosomal protein L12 hs
HG-U133A_2:203931_S_AT mitochondrial ribosomal protein L12 hs
HU35KSUBA:U25041_AT mitochondrial ribosomal protein L12 hs
HUGENEFL:U25041_AT mitochondrial ribosomal protein L12 hs
HU35KSUBD:RC_AA243278_F_AT mitochondrial ribosomal protein L12 hs
HU35KSUBD:RC_AA243278_I_AT mitochondrial ribosomal protein L12 hs
HU35KSUBD:RC_H99462_S_AT mitochondrial ribosomal protein L12 hs
HUGENEFL:X79865_AT mitochondrial ribosomal protein L12 hs
U133_X3P:G4506672_3P_AT mitochondrial ribosomal protein L12 hs
HG-U95AV2:39812_AT mitochondrial ribosomal protein L12 hs
HG-U133_PLUS_2:229165_AT Mitochondrial ribosomal protein L12 hs
HG-U133B:229165_AT Mitochondrial ribosomal protein L12 hs
U133_X3P:HS.109059.1.A1_3P_AT Mitochondrial ribosomal protein L12 hs
MG-U74AV2:160431_AT mitochondrial ribosomal protein L12 mm
MOE430A:1452048_AT mitochondrial ribosomal protein L12 mm
MOUSE430A_2:1452048_AT mitochondrial ribosomal protein L12 mm
MOUSE430_2:1452048_AT mitochondrial ribosomal protein L12 mm
MU19KSUBB:TC26357_AT Mitochondrial ribosomal protein L12 (Mrpl12), mRNA mm
MU19KSUBB:TC26357_G_AT Mitochondrial ribosomal protein L12 (Mrpl12), mRNA mm
MU19KSUBB:TC32991_S_AT Mitochondrial ribosomal protein L12 (Mrpl12), mRNA mm
RG-U34C:RC_AI176961_AT ribosomal protein, mitochondrial, L12 rn
RAE230A:1372431_AT ribosomal protein, mitochondrial, L12 rn
RAT230_2:1372431_AT ribosomal protein, mitochondrial, L12 rn
RAE230B:1396444_AT ribosomal protein, mitochondrial, L12 rn
RAT230_2:1396444_AT ribosomal protein, mitochondrial, L12 rn
RG-U34C:RC_AI175845_AT Ribosomal protein, mitochondrial, L12 rn
YEAST_2:1771076_AT Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with similarity to E. coli L7/L12 ribosomal protein; required for normal respiratory growth Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07857 Hypothetical protein W09D10.3 [Caenorhabditis elegans] ref|NP_499360.1| W09D10.3 [Caenorhabditis elegans] 1.0E-79
blast CAB07857 Hypothetical protein W09D10.3 [Caenorhabditis elegans] ref|NP_499360.1| W09D10.3 [Caenorhabditis elegans] 2.0E-79
blast CAE71462 Hypothetical protein CBG18380 [Caenorhabditis briggsae] emb|CAE71415.1| Hypothetical protein CBG18325 [Caenorhabditis briggsae] 2.0E-74
blast CAE71462 Hypothetical protein CBG18380 [Caenorhabditis briggsae] emb|CAE71415.1| Hypothetical protein CBG18325 [Caenorhabditis briggsae] 3.0E-74
blast AAK72378 60S ribosomal protein L7/L12 precursor [Spodoptera frugiperda] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000206 EMBL-EBI Ribosomal protein L7/L12 5.4E-13
Pfam IPR000206 EMBL-EBI Ribosomal protein L7/L12 5.4E-13
Sequence
Target Sequence 
>C. ELEGANS:193003_AT
ccgatctccaaggtgctcagaagcagcgcgaagtactcccaggccgcaggtcttccatta
aacgagggaagcccggcaccattgccatcagaagacagagcaatctccgcaaaagtcagc
tcgttggttgaagaaatcgcgaatctcagcctgctcgacgtctccgatcttaactgggct
ctcaagaagcggctcaacattccagatcaaccattgatggctgctgccgctgctgctcca
gccgctcaggccgaagcggaagccgcatcagacgttccacaaaaaatgacattcactgtg
aaattaacgaaattcgatgataccaagaagatcgcaatcatcaaggagatccgtaacgcc
attccaggcctcaatctcgttcaggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGATCTCCAAGGTGCTCAGAAGCA 159 265 34 Antisense
TCAGAAGCAGCGCGAAGTACTCCCA 671 621 50 Antisense
GCCGCAGGTCTTCCATTAAACGAGG 57 285 76 Antisense
TAAACGAGGGAAGCCCGGCACCATT 608 637 92 Antisense
GGCACCATTGCCATCAGAAGACAGA 183 535 108 Antisense
GCAATCTCCGCAAAAGTCAGCTCGT 65 323 133 Antisense
GAAGAAATCGCGAATCTCAGCCTGC 587 339 163 Antisense
AAGAAGCGGCTCAACATTCCAGATC 710 151 217 Antisense
TCCAGCCGCTCAGGCCGAAGCGGAA 300 589 270 Antisense
CAAGGAGATCCGTAACGCCATTCCA 240 183 375 Antisense
TCCAGGCCTCAATCTCGTTCAGGCC 133 589 396 Antisense
Sequence Source Affymetrix Proprietary Database