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[193000_s_at]

Description F30F8.3 /REP_DB=WormBase Gene ID /WP=CE27147 /TR=Q93654 /GB=CAB03034.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 80      6grp_total > 12      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 204.3
(0.6)
P 		173.8
(-0.7)
P 		262.6
(3)
P 		118.5
(-3)
P 		144
B 252.9
(0.1)
P 		295.9
(3)
P 		287.8
(2.5)
P 		205.5
(-3)
P 		90
C 250.2
(0.7)
P 		265
(3)
P 		260.6
(2.3)
P 		226.5
(-3)
P 		39
avr 235.8
(0.6) 		244.9
(1.2) 		270.3
(3) 		183.5
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 211.2
(0)
P 		276
(3)
P 		223
(0.6)
P 		226.5
(0.7)
P 		207.7
(-0.2)
P 		146.2
(-3)
P 		130
B 183.8
(-2.5)
P 		270.1
(3)
P 		204.8
(-1.2)
P 		200.6
(-1.5)
P 		196.3
(-1.7)
P 		176.7
(-3)
P 		93
C 343.2
(3)
P 		273.3
(0)
P 		258.4
(-0.6)
P 		228.8
(-1.9)
P 		201.7
(-3)
P 		201.7
(-3)
P 		142
avr 246.1
(1.4) 		273.1
(3) 		228.7
(0.3) 		218.6
(-0.3) 		201.9
(-1.4) 		174.9
(-3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 74.4
(3)
P 		37.7
(-0.9)
P 		68.7
(2.4)
P 		17.3
(-3)
P 		57
B 80.6
(3)
P 		73.1
(1.8)
P 		66.7
(0.7)
P 		43.8
(-3)
P 		37
C 82.8
(2.1)
P 		76.2
(1.3)
P 		90.8
(3)
P 		38.2
(-3)
P 		53
avr 79.3
(3) 		62.3
(0.8) 		75.4
(2.5) 		33.1
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 38.9
(-2.7)
P 		98.2
(3)
P 		48.6
(-1.8)
P 		57.4
(-0.9)
P 		62.7
(-0.4)
P 		35.6
(-3)
P 		63
B 63.9
(-0.9)
P 		89.9
(3)
P 		49.7
(-3)
P 		53.1
(-2.5)
P 		79.8
(1.5)
P 		65.9
(-0.6)
P 		40
C 127.2
(3)
P 		83.4
(-0.2)
P 		65.8
(-1.5)
P 		46
(-3)
P 		65.3
(-1.6)
P 		67.5
(-1.4)
P 		81
avr 76.7
(0.8) 		90.5
(3) 		54.7
(-2.6) 		52.2
(-3) 		69.3
(-0.3) 		56.3
(-2.4) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193000_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1233
Sequence Type Exemplar sequence
Representative Public ID F30F8.3 NCBI
Target Description F30F8.3 /REP_DB=WormBase Gene ID /WP=CE27147 /TR=Q93654 /GB=CAB03034.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059764 NCBI Caenorhabditis elegans F30F8.9a (F30F8.9) mRNA, complete cds. 11/11 None
SNAP00000014205 ENSEMBL cdna:SNAP chromosome:CEL140:I:7846736:7847853:1 9/11 None
GENEFINDER00000014217 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7846736:7847853:1 9/11 None
F30F8.9a.2 ENSEMBL cdna:known chromosome:CEL140:I:7845189:7847853:1 gene:F30F8.9 11/11 None
F30F8.9a.1 ENSEMBL cdna:known chromosome:CEL140:I:7845190:7848136:1 gene:F30F8.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182081 8/11 Cross Hyb Matching Probes None
GENEFINDER00000014215 2/11 Cross Hyb Matching Probes None
SNAP00000014204 2/11 Cross Hyb Matching Probes None
F30F8.9b.2 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172550 2 1 NM_059764 193000_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7843883-7847784(+) 100.0 100.0
Public Domain and Genome References
Ensembl F30F8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42296 Hypothetical protein F30F8.9a [Caenorhabditis elegans] ref|NP_492165.1| F30F8.9a [Caenorhabditis elegans] 1.0E-163
blast CAD56580 Hypothetical protein F30F8.9b [Caenorhabditis elegans] ref|NP_871881.1| F30F8.9b [Caenorhabditis elegans] 1.0E-147
blast CAE56121 Hypothetical protein CBG23729 [Caenorhabditis briggsae] 1.0E-128
blast CAC42296 Hypothetical protein F30F8.9a [Caenorhabditis elegans] ref|NP_492165.1| F30F8.9a [Caenorhabditis elegans] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492165.1 1 114-136
F30F8.9a.2 1 114-136
F30F8.9a.1 1 114-136
SNAP00000014205 1 15-37
GENEFINDER00000014217 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:193000_S_AT
acgaaacgagctgtggctaccggtcagaagaagctcacagatctcagcgttgaggaattg
gagacacttgttcagatgccagtcgaaggacccaaaatggcgattgttactgcgtttttg
cctgtgccactcagtgtttacgtctttgcattcgccataatcttctttcctcgcctcgtg
cttactcgtcatttttggtctgaccagcagcgacgagaatatttccaattggaagtgacc
aaagctctgatcagtggagagcaactgcttaaaacatatggaaatccttcgtcgactgat
gagaacaaaatgaagcctctcgataagcttgatagtagtgaaatgcttctcgtacataat
atgcaatcaatgtatccaattcctggatcgagcaaacgaatcatgaatcgaatgaaagct
ttaagagctctcgataatctattgccaactacaattgacggattcaacgaaagacaactt
atttttaactgctacattcgtaagattgatattggaaagaaaaacgactcggaaatgcga
gattcattgcggcagtatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAAACGAGCTGTGGCTACCGGTC 232 89 880 Antisense
AGAAGCTCACAGATCTCAGCGTTGA 77 75 908 Antisense
CGATTGTTACTGCGTTTTTGCCTGT 6 249 980 Antisense
CCTGTGCCACTCAGTGTTTACGTCT 28 267 1000 Antisense
CAGTGTTTACGTCTTTGCATTCGCC 45 207 1011 Antisense
TGCTTACTCGTCATTTTTGGTCTGA 364 577 1058 Antisense
TTTGGTCTGACCAGCAGCGACGAGA 284 667 1073 Antisense
GGAAGTGACCAAAGCTCTGATCAGT 369 531 1110 Antisense
GCCTCTCGATAAGCTTGATAGTAGT 664 275 1194 Antisense
GAGCTCTCGATAATCTATTGCCAAC 629 387 1304 Antisense
GCGAGATTCATTGCGGCAGTATGTC 148 291 1416 Antisense
Sequence Source Affymetrix Proprietary Database