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[192998_at]

Description C09D1.1 /REP_DB=WormBase Gene ID /WP=CE08028 /GEN=unc-89 /TR=O01761 /GB=AAB54132.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=immunoglobin-like protein
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 27      6grp_total > 04      4grp_total > 45      6grp_cgc > 31      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 133.4
(3)
P 		109.5
(0.9)
P 		98.8
(-0)
P 		64.5
(-3)
A 		69
B 90.9
(1.2)
P 		103.3
(3)
P 		68.5
(-2)
P 		61.2
(-3)
A 		42
C 123.4
(3)
P 		99.8
(0.4)
P 		68.3
(-3)
P 		99.9
(0.4)
P 		55
avr 115.9
(3) 		104.2
(1.3) 		78.5
(-2.5) 		75.2
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 115.9
(3)
P 		91.9
(1.7)
P 		78.9
(0.9)
P 		61.4
(-0.1)
M 		99.3
(2.1)
P 		9.1
(-3)
A 		107
B 135.9
(3)
P 		88.7
(0.4)
P 		76.3
(-0.3)
P 		102.7
(1.1)
P 		28.8
(-3)
A 		37.2
(-2.5)
A 		107
C 163.2
(3)
P 		115.5
(0.3)
P 		93.8
(-1)
P 		85.1
(-1.5)
P 		59
(-3)
P 		70.6
(-2.3)
P 		104
avr 138.3
(3) 		98.7
(0.6) 		83
(-0.3) 		83.1
(-0.3) 		62.4
(-1.6) 		39
(-3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 48.6
(3)
P 		23.8
(-0.8)
P 		25.8
(-0.5)
P 		9.4
(-3)
A 		39
B 29
(3)
P 		25.5
(1.7)
P 		15.9
(-1.9)
P 		13.1
(-3)
A 		16
C 40.9
(3)
P 		28.7
(-0)
P 		23.8
(-1.3)
P 		16.8
(-3)
P 		24
avr 39.5
(3) 		26
(-0.1) 		21.8
(-1) 		13.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 21.4
(0.8)
P 		32.7
(3)
P 		17.2
(-0)
P 		15.6
(-0.4)
M 		29.9
(2.4)
P 		2.2
(-3)
A 		31
B 47.3
(3)
P 		29.5
(0)
P 		18.5
(-1.9)
P 		27.2
(-0.4)
P 		11.7
(-3)
A 		13.9
(-2.6)
A 		36
C 60.5
(3)
P 		35.2
(-0.5)
P 		23.9
(-2.1)
P 		17.1
(-3)
P 		19.1
(-2.7)
P 		23.6
(-2.1)
P 		43
avr 43.1
(3) 		32.5
(0.9) 		19.9
(-1.7) 		20
(-1.6) 		20.2
(-1.6) 		13.2
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1
Sequence Type Exemplar sequence
Representative Public ID C09D1.1 NCBI
Target Description C09D1.1 /REP_DB=WormBase Gene ID /WP=CE08028 /GEN=unc-89 /TR=O01761 /GB=AAB54132.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=immunoglobin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025814(11), NM_001025818(11), NM_001025819(11), NM_001025817(11), NM_001025813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025814 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
NM_001025818 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
NM_001025819 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
NM_001025817 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
NM_001025813 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
GENEFINDER00000001482 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4066039:4090428:1 11/11 None
SNAP00000001455 ENSEMBL cdna:SNAP chromosome:CEL140:I:4075269:4078128:1 11/11 None
C09D1.1e ENSEMBL cdna:known chromosome:CEL140:I:4035894:4078798:1 gene:C09D1.1 11/11 None
C09D1.1a ENSEMBL cdna:known chromosome:CEL140:I:4035894:4078128:1 gene:C09D1.1 11/11 A 
C09D1.1f ENSEMBL cdna:known chromosome:CEL140:I:4035894:4090428:1 gene:C09D1.1 11/11 None
C09D1.1b ENSEMBL cdna:known chromosome:CEL140:I:4035894:4090875:1 gene:C09D1.1 11/11 A 
C09D1.1g ENSEMBL cdna:known chromosome:CEL140:I:4035894:4084508:1 gene:C09D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171990 7 5 NM_001025813 175353_s_at (11), 192998_at (11)
NM_001025814 174686_at (11), 175353_s_at (11), 189196_at (11), 192998_at (11)
NM_001025815 189196_at (11)
NM_001025816 189196_at (11)
NM_001025817 174492_at (11), 192998_at (11)
NM_001025818 189196_at (11), 192998_at (11)
NM_001025819 175353_s_at (11), 192998_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4035893-4078128(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09D1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68958 Uncoordinated protein 89, isoform b [Caenorhabditis elegans] ref|NP_001020985.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
blast AAV34800 Uncoordinated protein 89, isoform f [Caenorhabditis elegans] ref|NP_001020989.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
blast AAV34801 Uncoordinated protein 89, isoform g [Caenorhabditis elegans] ref|NP_001020990.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
blast AAV34799 Uncoordinated protein 89, isoform e [Caenorhabditis elegans] ref|NP_001020988.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 4.0E-37
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 2.0E-37
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 7.0E-38
hanks 2.1.15 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-M 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-12
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-41
Pfam IPR000719 EMBL-EBI Protein kinase 7.4E-29
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.06
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.9E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.3
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.014
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0098
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.5E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-14
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0098
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-12
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-41
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-30
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.9E-8
Pfam IPR007850 EMBL-EBI RCSD 1.4E-35
Pfam IPR007850 EMBL-EBI RCSD 2.0E-50
Pfam IPR007850 EMBL-EBI RCSD 7.5E-38
Pfam IPR007850 EMBL-EBI RCSD 1.1E-30
Pfam IPR007850 EMBL-EBI RCSD 3.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.6E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.34
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.024
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0023
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.68
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.9E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.77
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.06
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.9E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.3
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.014
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0098
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.5E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-12
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-41
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-30
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.024
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0023
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.68
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.9E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.77
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.06
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.9E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.3
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.014
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-5
Pfam IPR007110