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[192996_s_at] Vertebrate galactoside-binding lectins

Description F46A8.3 /REP_DB=WormBase Gene ID /WP=CE10562 /TR=O01329 /GB=CAB04389.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster 6grp_total > 93      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.3
(-3)
A 		4.2
(1.9)
A 		4.4
(3)
A 		3.4
(-2.5)
A 		1
B 2.1
(-2.6)
A 		2.8
(-2.1)
A 		1.4
(-3)
A 		10.9
(3)
A 		10
C 5
(-2.1)
A 		5.6
(-1.8)
A 		2.9
(-3)
A 		16.2
(3)
A 		13
avr 3.5
(-2.5) 		4.2
(-1.9) 		2.9
(-3) 		10.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.4
(-1.1)
A 		9.6
(1.4)
A 		2.2
(-3)
A 		2.3
(-2.9)
A 		4.2
(-1.8)
A 		12.3
(3)
A 		10
B 4.7
(3)
A 		1.6
(-2.5)
A 		1.9
(-1.9)
A 		2.1
(-1.6)
A 		1.3
(-3)
A 		2
(-1.8)
A 		3
C 1.6
(-3)
A 		9.1
(-1)
A 		6.4
(-1.7)
A 		3.2
(-2.6)
A 		23.9
(3)
A 		1.7
(-3)
A 		22
avr 3.9
(-1.8) 		6.8
(0.5) 		3.5
(-2.2) 		2.5
(-3) 		9.8
(3) 		5.3
(-0.7) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(3)
A 		0.9
(0.4)
A 		1.1
(2.1)
A 		0.5
(-3)
A 		1
B 0.7
(-1.8)
A 		0.7
(-1.8)
A 		0.3
(-3)
A 		2.3
(3)
A 		2
C 1.6
(-0.9)
A 		1.6
(-0.9)
A 		1
(-3)
A 		2.7
(3)
A 		2
avr 1.2
(-0.6) 		1.1
(-1.2) 		0.8
(-3) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-2)
A 		3.4
(3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		1.3
(-1.3)
A 		3
(2.2)
A 		3
B 1.6
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		0.8
(-1.4)
A 		1
C 0.6
(-3)
A 		2.8
(-1.1)
A 		1.6
(-2.2)
A 		0.6
(-3)
A 		7.7
(3)
A 		0.6
(-3)
A 		7
avr 1.1
(-1.8) 		2.2
(0.7) 		0.9
(-2.3) 		0.6
(-3) 		3.2
(3) 		1.5
(-0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192996_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.473
Sequence Type Exemplar sequence
Representative Public ID F46A8.3 NCBI
Target Description F46A8.3 /REP_DB=WormBase Gene ID /WP=CE10562 /TR=O01329 /GB=CAB04389.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060484 NCBI Caenorhabditis elegans F46A8.3 (F46A8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000031227 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11247840:11253172:-1 11/11 None
SNAP00000031221 ENSEMBL cdna:SNAP chromosome:CEL140:I:11250878:11251644:-1 11/11 None
F46A8.3 ENSEMBL cdna:known chromosome:CEL140:I:11250864:11251644:-1 gene:F46A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11250808-11251575(-) 100.0 100.0
chrIV:4140657-4141406(-) 90.68 90.68
Public Domain and Genome References
Gene Title Vertebrate galactoside-binding lectins
Ensembl F46A8.3
Entrez Gene 173018 Entrez gene
SwissProt O01329 EMBL-EBI
WormBase CE10562 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04389 Hypothetical protein F46A8.3 [Caenorhabditis elegans] ref|NP_492885.1| F46A8.3 [Caenorhabditis elegans] 1.0E-106
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 8.0E-95
blast CAB04389 Hypothetical protein F46A8.3 [Caenorhabditis elegans] ref|NP_492885.1| F46A8.3 [Caenorhabditis elegans] 4.0E-87
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 6.0E-79
blast CAB04391 Hypothetical protein F46A8.5 [Caenorhabditis elegans] ref|NP_492883.1| F46A8.5 [Caenorhabditis elegans] 9.0E-76
blast CAB04390 Hypothetical protein F46A8.4 [Caenorhabditis elegans] ref|NP_492884.1| F46A8.4 [Caenorhabditis elegans] 1.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031227 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:192996_S_AT
gggaaaaggcctaagttcgacgatgattcctccgatgattacagtggacgacgtggtgga
gggcggcaaagacctccaaggcctccaaggcctgcaccaacacctaagcctagagaagac
tggataacgatcaatggaccatttacaaccactctacctattcctggaggatattgggat
actgggaagatcatgcgaatatacggtattcctggaagcggaagatggaccatcaatctg
gccaaatcacaaacttgggtgttccatttcgcgtgtgaacctaccaagggacttgtagcc
agaacccgacatacgaatggagcgtgggaagtcggagagacatatagtgaaaacccattt
caagctaacacccaattcaatgttactatggtcaatcagccaacgcatattgagattcat
gtcaatggtgcattctttgtgaactttaatcatcgagttcccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAAAGGCCTAAGTTCGACGATG 702 239 166 Antisense
AGTTCGACGATGATTCCTCCGATGA 615 63 179 Antisense
GGAGGGCGGCAAAGACCTCCAAGGC 559 513 223 Antisense
GGACCATCAATCTGGCCAAATCACA 496 523 392 Antisense
ATCAATCTGGCCAAATCACAAACTT 696 25 397 Antisense
GCCAAATCACAAACTTGGGTGTTCC 543 277 406 Antisense
GAGACATATAGTGAAAACCCATTTC 198 393 502 Antisense
ACCCATTTCAAGCTAACACCCAATT 335 83 518 Antisense
GCTAACACCCAATTCAATGTTACTA 440 301 529 Antisense
GGTGCATTCTTTGTGAACTTTAATC 124 501 592 Antisense
GAACTTTAATCATCGAGTTCCCAAT 535 349 606 Antisense
Sequence Source Affymetrix Proprietary Database