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[192992_at]

Description Y51A2D.13 /REP_DB=WormBase Gene ID /WP=CE19209 /TR=Q9XXR6 /GB=CAA16397.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Phospholipase D. Active site motifs.
Cluster 4grp_high_8_8 > 02      6grp_total > 29      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 738
1 2 3 4 range
A 906.7
(1.4)
P 		446
(-2.4)
P 		376.6
(-3)
A 		1099.4
(3)
P 		723
B 986.4
(1.9)
P 		555.9
(-1.6)
P 		383.8
(-3)
A 		1114.3
(3)
P 		731
C 959.6
(1.8)
P 		490.2
(-3)
P 		495.4
(-2.9)
P 		1076.5
(3)
P 		586
avr 950.9
(1.7) 		497.4
(-2.3) 		418.6
(-3) 		1096.7
(3) 		678

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 663
1 2 3 4 5 6 range
A 522.9
(3)
P 		423.5
(1.5)
P 		136.5
(-3)
A 		277.5
(-0.8)
A 		391.7
(1)
P 		325.9
(-0.1)
P 		386
B 541.1
(2.5)
P 		255.7
(-1.7)
M 		163
(-3)
A 		229.5
(-2)
P 		577.5
(3)
P 		245.7
(-1.8)
P 		415
C 799.5
(3)
P 		232.8
(-2.6)
M 		312.7
(-1.9)
A 		197.3
(-3)
A 		653.6
(1.5)
P 		255.2
(-2.4)
P 		602
avr 621.2
(3) 		304
(-1.6) 		204.1
(-3) 		234.8
(-2.6) 		540.9
(1.8) 		275.6
(-2) 		417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 330.1
(3)
P 		96.8
(-3)
P 		98.4
(-3)
A 		160.9
(-1.4)
P 		233
B 314.5
(3)
P 		137.3
(-1.7)
P 		88.9
(-3)
A 		237.5
(1)
P 		226
C 317.7
(3)
P 		140.9
(-3)
P 		172.7
(-1.9)
P 		181.5
(-1.6)
P 		177
avr 320.8
(3) 		125
(-2.9) 		120
(-3) 		193.3
(-0.8) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 96.4
(0.3)
P 		150.6
(3)
P 		29.7
(-3)
A 		70.4
(-1)
A 		118.2
(1.4)
P 		79.4
(-0.5)
P 		121
B 188.3
(1.6)
P 		85.1
(-1.6)
M 		39.6
(-3)
A 		60.8
(-2.3)
P 		234.6
(3)
P 		91.6
(-1.4)
P 		195
C 296.3
(3)
P 		71
(-2.3)
M 		79.6
(-2.1)
A 		39.7
(-3)
A 		211.5
(1)
P 		85.4
(-1.9)
P 		257
avr 193.7
(3) 		102.2
(-0.8) 		49.6
(-3) 		57
(-2.7) 		188.1
(2.8) 		85.5
(-1.5) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13334
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.13 NCBI
Target Description Y51A2D.13 /REP_DB=WormBase Gene ID /WP=CE19209 /TR=Q9XXR6 /GB=CAA16397.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Phospholipase D. Active site motifs.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075231(11), NM_182345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075231 NCBI Caenorhabditis elegans Y51A2D.13a (Y51A2D.13) mRNA, complete cds. 11/11 None
NM_182345 NCBI Caenorhabditis elegans Y51A2D.13b (Y51A2D.13) mRNA, complete cds. 11/11 None
GENEFINDER00000034269 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18575722:18582180:-1 11/11 None
Y51A2D.13a ENSEMBL cdna:known chromosome:CEL140:V:18575648:18580150:-1 gene:Y51A2D.13 11/11 None
Y51A2D.13b ENSEMBL cdna:known chromosome:CEL140:V:18575722:18582358:-1 gene:Y51A2D.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18575721-18580023(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y51A2D.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16397 Hypothetical protein Y51A2D.13a [Caenorhabditis elegans] ref|NP_507632.1| Y51A2D.13a [Caenorhabditis elegans] 0.0
blast CAD56614 Hypothetical protein Y51A2D.13b [Caenorhabditis elegans] ref|NP_872145.1| Y51A2D.13b [Caenorhabditis elegans] 0.0
blast CAE61610 Hypothetical protein CBG05531 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 2.2E-6
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 2.2E-6
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 2.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507632.1 1 13-32
Y51A2D.13a 1 13-32
GENEFINDER00000034269 4 247-266,283-300,329-351,406-425
Sequence
Target Sequence 
>C. ELEGANS:192992_AT
acatgggacctcgacgcaattgtctcggaaattgacgccgccaagaaattcattgatatc
catgttatggactatttcccgttgttcatctaccgtaatccacgtgtacatttctcgaat
attgatgacgcgatccgacgggcggtggttagaggcgtcaaaattcgattcctagccgcc
gcgcttcattatccggatattggaacgaggttcctgagatccttggaatcgttgaatggt
ttccatgctaatggtactatggaagtgaaaatcttcaaagttccacgtaccaacattgaa
agtatagtaattaatcgggagcgccggacgcataataaattcatggtcaccgagtcggcg
ggaattattggaacctcaaattggtcgggagactattttatgggtggaactactggagct
gcgatagttatcaggcaaaccggggagaagcggccttttgtggatgagttgaaggatatc
ttcacccgcgactgggaaagtgcatattcccacccactcgatgaatattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGGGACCTCGACGCAATTGTCT 456 107 853 Antisense
TTGTCTCGGAAATTGACGCCGCCAA 483 705 872 Antisense
ATGGACTATTTCCCGTTGTTCATCT 236 53 919 Antisense
GTAATCCACGTGTACATTTCTCGAA 120 463 947 Antisense
GCGATCCGACGGGCGGTGGTTAGAG 442 285 982 Antisense
GCCGCGCTTCATTATCCGGATATTG 709 285 1030 Antisense
GAACGAGGTTCCTGAGATCCTTGGA 139 347 1055 Antisense
TAATCGGGAGCGCCGGACGCATAAT 185 633 1164 Antisense
TGGGTGGAACTACTGGAGCTGCGAT 439 551 1253 Antisense
ATATCTTCACCCGCGACTGGGAAAG 632 19 1328 Antisense
ATTCCCACCCACTCGATGAATATTT 154 9 1358 Antisense
Sequence Source Affymetrix Proprietary Database