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[192990_at] Ribosomal protein S14

Description F37C12.9 /REP_DB=WormBase Gene ID /WP=CE00821 /GEN=rps-14 /TR=SW:P48150 /GB=AAC48301.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein S14
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 42      4grp_total > 24      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12195
1 2 3 4 range
A 21937
(-3)
P 		27751.4
(0.1)
P 		26817.6
(-0.4)
P 		33171.2
(3)
P 		11234
B 22430.8
(-3)
P 		24545.2
(-0.7)
P 		28041.9
(3)
P 		27008.2
(1.9)
P 		5611
C 20976.3
(-3)
P 		23814
(-1.2)
P 		21472.1
(-2.7)
P 		30276.8
(3)
P 		9301
avr 21781.4
(-3) 		25370.2
(-0.4) 		25443.9
(-0.4) 		30152.1
(3) 		8371

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8403
1 2 3 4 5 6 range
A 21081.2
(1.3)
P 		20537.3
(0.9)
P 		22960.2
(3)
P 		21721.6
(1.9)
P 		16160.1
(-3)
P 		20454
(0.8)
P 		6800
B 19810.9
(1.1)
P 		19118.3
(0.6)
P 		22205.5
(3)
P 		18047.8
(-0.3)
P 		15883.1
(-2)
P 		14557.4
(-3)
P 		7648
C 18540.7
(-1.4)
P 		19292.1
(-0.6)
P 		22752.3
(3)
P 		20103.3
(0.2)
P 		19585.2
(-0.3)
P 		17013.4
(-3)
P 		5739
avr 19810.9
(-0.1) 		19649.2
(-0.3) 		22639.3
(3) 		19957.6
(0) 		17209.5
(-3) 		17341.6
(-2.9) 		5430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3132
1 2 3 4 range
A 7987.3
(3)
P 		6024.1
(-0.8)
P 		7010.6
(1.1)
P 		4855.6
(-3)
P 		3132
B 7153
(3)
P 		6062.1
(-1.7)
P 		6498
(0.2)
P 		5755.5
(-3)
P 		1398
C 6943.7
(1.6)
P 		6846.7
(1.4)
P 		7483.7
(3)
P 		5105.1
(-3)
P 		2379
avr 7361.3
(3) 		6311
(0) 		6997.4
(2) 		5238.7
(-3) 		2123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3418
1 2 3 4 5 6 range
A 3886.2
(-3)
P 		7304.1
(3)
P 		5000.3
(-1)
P 		5509.1
(-0.2)
P 		4876.4
(-1.3)
P 		4979.9
(-1.1)
P 		3418
B 6893.2
(3)
P 		6363.7
(1.5)
P 		5392.2
(-1.3)
P 		4780.2
(-3)
P 		6453.1
(1.8)
P 		5428.4
(-1.2)
P 		2113
C 6872.2
(3)
P 		5886.6
(0.9)
P 		5790.9
(0.7)
P 		4042.8
(-3)
P 		6337.5
(1.9)
P 		5695.4
(0.5)
P 		2829
avr 5883.9
(0.8) 		6518.1
(3) 		5394.5
(-0.9) 		4777.4
(-3) 		5889
(0.8) 		5367.9
(-1) 		1741
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6777
Sequence Type Exemplar sequence
Representative Public ID F37C12.9 NCBI
Target Description F37C12.9 /REP_DB=WormBase Gene ID /WP=CE00821 /GEN=rps-14 /TR=SW:P48150 /GB=AAC48301.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein S14
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066171 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-14) (rps-14) mRNA, complete cds. 11/11 A 
SNAP00000030589 ENSEMBL cdna:SNAP chromosome:CEL140:III:7178954:7179503:-1 11/11 None
GENEFINDER00000030611 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7178954:7179503:-1 11/11 None
F37C12.9.4 ENSEMBL cdna:known chromosome:CEL140:III:7178434:7179518:-1 gene:F37C12.9 11/11 A 
F37C12.9.3 ENSEMBL cdna:known chromosome:CEL140:III:7178434:7179528:-1 gene:F37C12.9 11/11 A 
F37C12.9.2 ENSEMBL cdna:known chromosome:CEL140:III:7178434:7179528:-1 gene:F37C12.9 11/11 A 
F37C12.9.1 ENSEMBL cdna:known chromosome:CEL140:III:7178911:7179512:-1 gene:F37C12.9 11/11 A 
F37C12.9.5 ENSEMBL cdna:known chromosome:CEL140:III:7178913:7252922:-1 gene:F37C12.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7178951-7179501(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein S14
Gene Symbol rps-14
Ensembl F37C12.9
Entrez Gene 176006 Entrez gene
SwissProt P48150 EMBL-EBI
WormBase CE00821 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259239_AT 40S ribosomal protein S14 (RPS14B) at
CANINE:1583161_X_AT Ribosomal protein S14 cfa
CANINE:1599428_X_AT Ribosomal protein S14 cfa
CANINE:1599987_AT Ribosomal protein S14 cfa
CANINE:1585036_X_AT Ribosomal protein S14 cfa
CANINE:1583160_S_AT Ribosomal protein S14 cfa
CANINE_2:CFAAFFX.19870.1.S1_AT Ribosomal protein S14 cfa
CANINE_2:CFAAFFX.19870.1.S1_S_AT Ribosomal protein S14 cfa
CANINE_2:CFAAFFX.27721.1.S1_AT Ribosomal protein S14 cfa
CHICKEN:GGA.4512.2.S1_S_AT ribosomal protein S14 gga
CHICKEN:GGAAFFX.13119.1.S1_S_AT ribosomal protein S14 gga
CHICKEN:GGA.4512.2.S1_AT Similar to ribosomal protein S14 gga
HG-U133_PLUS_2:208646_AT ribosomal protein S14 hs
HG-U133A_2:208646_AT ribosomal protein S14 hs
HG-U133A:208646_AT ribosomal protein S14 hs
HG-U133_PLUS_2:208645_S_AT ribosomal protein S14 hs
HG-U133A_2:208645_S_AT ribosomal protein S14 hs
HG-U133A:208645_S_AT ribosomal protein S14 hs
HG-FOCUS:208645_S_AT ribosomal protein S14 hs
HU35KSUBD:RC_AA400813_AT ribosomal protein S14 hs
HUGENEFL:M13934_CDS2_AT ribosomal protein S14 hs
U133_X3P:G7959918_3P_X_AT ribosomal protein S14 hs
U133_X3P:G7959918_3P_AT ribosomal protein S14 hs
U133_X3P:G7959918_3P_A_AT ribosomal protein S14 hs
U133_X3P:HS.244621.2.S1_3P_AT ribosomal protein S14 hs
U133_X3P:208645_3P_S_AT ribosomal protein S14 hs
HG-U133A_2:214245_AT ribosomal protein S14 hs
HG-U133_PLUS_2:214245_AT ribosomal protein S14 hs
HG-U133A:214245_AT ribosomal protein S14 hs
HG-U95AV2:32412_AT ribosomal protein S14 hs
HG-U95E:87955_AT ribosomal protein S14 hs
HG-U133_PLUS_2:241241_AT Ribosomal protein S14 hs
HG-U133B:241241_AT Ribosomal protein S14 hs
HG-U95D:78774_AT Ribosomal protein S14 hs
U133_X3P:HS.135151.0.A1_3P_AT Ribosomal protein S14 hs
MOE430A:1437706_X_AT ribosomal protein S14 mm
MOUSE430A_2:1437706_X_AT ribosomal protein S14 mm
MOUSE430_2:1437706_X_AT ribosomal protein S14 mm
MG-U74AV2:99657_AT ribosomal protein S14 mm
MOUSE430A_2:1436586_X_AT ribosomal protein S14 mm
MOE430A:1436586_X_AT ribosomal protein S14 mm
MOUSE430_2:1436586_X_AT ribosomal protein S14 mm
MU11KSUBB:W13615_S_AT ribosomal protein S14 mm
MG-U74BV2:165190_F_AT ribosomal protein S14 mm
MU19KSUBA:TC23052_AT Ribosomal protein S14 (Rps14), mRNA mm
MU19KSUBA:TC23053_S_AT Ribosomal protein S14 (Rps14), mRNA mm
MU19KSUBB:TC32965_F_AT Ribosomal protein S14 (Rps14), mRNA mm
RG-U34A:RC_AA945806_AT ribosomal protein S14 rn
RAE230A:1368211_AT ribosomal protein S14 rn
RAT230_2:1368211_AT ribosomal protein S14 rn
YEAST_2:1775186_AT Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE63805 Hypothetical protein CBG08351 [Caenorhabditis briggsae] 8.0E-64
blast AAC48301 Ribosomal protein, small subunit protein 14 [Caenorhabditis elegans] ref|NP_498572.1| Ribosomal Protein, Small subunit family member (rps-14) [Caenorhabditis elegans] sp|P48150|RS14_CAEEL 40S ribosomal protein S14 8.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001971 EMBL-EBI Ribosomal protein S11 5.7E-72
Sequence
Target Sequence 
>C. ELEGANS:192990_AT
ggctcccgctcgtaagggaaaggctaaggaggaacaggctgtcgtgtcccttggaccaca
ggccaaagaaggagagctcatcttcggagtcgctcacatctttgcttcgttcaacgacac
tttcgtccacatcaccgatatctcaggacgtgaaaccatcgttcgagttaccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCCCGCTCGTAAGGGAAAGGCT 4 541 15 Antisense
AAGGCTAAGGAGGAACAGGCTGTCG 120 155 34 Antisense
AGGAGGAACAGGCTGTCGTGTCCCT 345 55 41 Antisense
GGACCACAGGCCAAAGAAGGAGAGC 4 523 67 Antisense
AAGGAGAGCTCATCTTCGGAGTCGC 348 161 83 Antisense
CACATCTTTGCTTCGTTCAACGACA 2 197 109 Antisense
TTCAACGACACTTTCGTCCACATCA 624 683 124 Antisense
CGTCCACATCACCGATATCTCAGGA 632 245 138 Antisense
CCACATCACCGATATCTCAGGACGT 481 275 141 Antisense
CTCAGGACGTGAAACCATCGTTCGA 635 213 156 Antisense
GAAACCATCGTTCGAGTTACCGGAG 405 355 166 Antisense
Sequence Source Affymetrix Proprietary Database