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[192989_at] Zinc finger, C2H2 type (2 domains)

Description T09A5.12 /REP_DB=WormBase Gene ID /WP=CE03646 /TR=SW:P45972 /GB=CAA85341.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 14      4grp_high_8_8 > 32      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 47      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 463
1 2 3 4 range
A 475.3
(3)
P 		216.7
(-1.2)
P 		190.4
(-1.7)
P 		109
(-3)
A 		366
B 496.8
(3)
P 		165.1
(-3)
A 		167.1
(-3)
P 		197.9
(-2.4)
P 		332
C 572.4
(3)
P 		171.8
(-3)
M 		271.3
(-1.5)
P 		206.4
(-2.5)
P 		401
avr 514.8
(3) 		184.5
(-2.8) 		209.6
(-2.3) 		171.1
(-3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 461.5
(3)
P 		433.4
(2)
P 		295.9
(-2.9)
P 		404.2
(1)
P 		301.7
(-2.7)
P 		293.4
(-3)
P 		168
B 553.2
(2.2)
P 		600.7
(3)
P 		386.9
(-0.8)
P 		435.4
(0)
P 		441.3
(0.2)
P 		264.6
(-3)
P 		336
C 758.1
(3)
P 		594.9
(0.8)
P 		389.4
(-2)
P 		404.3
(-1.8)
P 		330.2
(-2.8)
P 		315.3
(-3)
P 		443
avr 590.9
(3) 		543
(2) 		357.4
(-1.7) 		414.6
(-0.5) 		357.7
(-1.7) 		291.1
(-3) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 173
(3)
P 		47
(-1.8)
P 		49.8
(-1.7)
P 		16
(-3)
A 		157
B 158.4
(3)
P 		40.8
(-2.9)
A 		38.7
(-3)
P 		42.2
(-2.8)
P 		120
C 189.5
(3)
P 		49.4
(-2.4)
M 		94.6
(-0.7)
P 		34.8
(-3)
P 		155
avr 173.6
(3) 		45.7
(-2.4) 		61
(-1.7) 		31
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 85.1
(-1.6)
P 		154.1
(3)
P 		64.4
(-3)
P 		102.5
(-0.5)
P 		91.1
(-1.2)
P 		71.4
(-2.5)
P 		90
B 192.5
(2.6)
P 		199.9
(3)
P 		93.9
(-3)
P 		115.3
(-1.8)
P 		179.3
(1.8)
P 		98.7
(-2.7)
P 		106
C 281
(3)
P 		181.5
(0)
P 		99.1
(-2.5)
P 		81.3
(-3)
P 		106.9
(-2.2)
P 		105.6
(-2.3)
P 		200
avr 186.2
(3) 		178.5
(2.5) 		85.8
(-3) 		99.7
(-2.2) 		125.8
(-0.6) 		91.9
(-2.6) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5180
Sequence Type Exemplar sequence
Representative Public ID T09A5.12 NCBI
Target Description T09A5.12 /REP_DB=WormBase Gene ID /WP=CE03646 /TR=SW:P45972 /GB=CAA85341.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063255 NCBI Caenorhabditis elegans T09A5.12 (T09A5.12) mRNA, complete cds. 11/11 None
SNAP00000029443 ENSEMBL cdna:SNAP chromosome:CEL140:II:7866791:7870073:-1 9/11 None
T09A5.12.1 ENSEMBL cdna:known chromosome:CEL140:II:7866175:7870082:-1 gene:T09A5.12 11/11 None
T09A5.12.2 ENSEMBL cdna:known chromosome:CEL140:II:7866175:7870084:-1 gene:T09A5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029452 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7866777-7870070(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (2 domains)
Ensembl T09A5.12
Entrez Gene 174269 Entrez gene
SwissProt P45972 EMBL-EBI
WormBase CE03646 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85341 Hypothetical protein T09A5.12 [Caenorhabditis elegans] ref|NP_495656.1| T09A5.12 [Caenorhabditis elegans] sp|P45972|YNZB_CAEEL Hypothetical protein T09A5.12 in chromosome III 0.0
blast CAE59829 Hypothetical protein CBG03301 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495656.1 1 683-705
T09A5.12.1 1 683-705
T09A5.12.2 1 683-705
Sequence
Target Sequence 
>C. ELEGANS:192989_AT
ggctgcttttaatggaactggctatcgtaacaattcaggaccaattccaatcactaaccc
atatttgtcaatgacaatgaaaccttctataaatggaaaccgcagacttccatattccgg
tatgactataaagaaggagctagaatcaattacgatgaagaaggctgtgccgattcgttt
caatggaggacaacttcaaaatctcgaaatgaattcgagtattgaggagtatgacgaaag
taaagtcaaaattgaaatggacgatgaagatgctctcgcgactcaaagtattttgaaaga
tgactttgaagaattcaaaaccgaagatttatttggactcggtggaggagacgatgaaat
tttgtgtggcggagaagaagcttcaggagttacttctaatattgatgggattctcgctgc
aaatcttccagataactttaatgatccgctgtgcggtaggacttggccactgatttcagt
ggaccatttgatgatgacgtattcgatgagctacttggactcactaatttcaacgatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGCTTTTAATGGAACTGGCTAT 104 535 1566 Antisense
GGCTATCGTAACAATTCAGGACCAA 574 537 1585 Antisense
CCAATTCCAATCACTAACCCATATT 487 275 1606 Antisense
GCAGACTTCCATATTCCGGTATGAC 210 313 1667 Antisense
AAGGCTGTGCCGATTCGTTTCAATG 432 161 1726 Antisense
GATGCTCTCGCGACTCAAAGTATTT 61 415 1834 Antisense
GAAGATTTATTTGGACTCGGTGGAG 50 339 1888 Antisense
TGGGATTCTCGCTGCAAATCTTCCA 179 553 1971 Antisense
ATAACTTTAATGATCCGCTGTGCGG 270 25 1997 Antisense
ATCCGCTGTGCGGTAGGACTTGGCC 33 39 2009 Antisense
TGGACTCACTAATTTCAACGATCGT 634 547 2081 Antisense
Sequence Source Affymetrix Proprietary Database