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[192988_at] fatty acid-binding protein

Description W02D3.5 /REP_DB=WormBase Gene ID /WP=CE14426 /GEN=lbp-6 /TR=O01812 /GB=AAK21484.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 07      6grp_total > 32      4grp_total > 58      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12600
1 2 3 4 range
A 10350.4
(-0.4)
P 		15747.1
(2.2)
P 		17412.7
(3)
P 		4813.1
(-3)
P 		12600
B 9617.6
(-0.8)
P 		14577.4
(2)
P 		16316.5
(3)
P 		5619.4
(-3)
P 		10697
C 10375
(0.2)
P 		14740.1
(2.8)
P 		15008.7
(3)
P 		5035
(-3)
P 		9974
avr 10114.3
(-0.3) 		15021.5
(2.3) 		16246
(3) 		5155.8
(-3) 		11090

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11668
1 2 3 4 5 6 range
A 13813.5
(0.7)
P 		13353.6
(0.5)
P 		18298.5
(3)
P 		12180.5
(-0.1)
P 		7830.7
(-2.4)
P 		6630.4
(-3)
P 		11668
B 13841
(0.7)
P 		14094.6
(0.8)
P 		18223.7
(3)
P 		11665.9
(-0.5)
P 		8203.2
(-2.3)
P 		6820.9
(-3)
P 		11403
C 12230.4
(0.8)
P 		15166.4
(3)
P 		14865.3
(2.8)
P 		12362.6
(0.9)
P 		7375
(-2.9)
P 		7218
(-3)
P 		7948
avr 13295
(0.8) 		14204.9
(1.3) 		17129.2
(3) 		12069.7
(0) 		7803
(-2.5) 		6889.8
(-3) 		10239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4527
1 2 3 4 range
A 3768.6
(1.8)
P 		3418.3
(1.2)
P 		4552
(3)
P 		704.5
(-3)
P 		3848
B 3067
(1.3)
P 		3600.3
(2.6)
P 		3780.9
(3)
P 		1197.5
(-3)
P 		2583
C 3434.4
(0.5)
P 		4237.9
(1.6)
P 		5231
(3)
P 		849
(-3)
P 		4382
avr 3423.3
(1.2) 		3752.2
(1.7) 		4521.3
(3) 		917
(-3) 		3604

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3202
1 2 3 4 5 6 range
A 2546.4
(-1.2)
P 		4749.2
(3)
P 		3985
(1.5)
P 		3089.3
(-0.2)
P 		2363
(-1.6)
P 		1614.3
(-3)
P 		3135
B 4816
(3)
P 		4691.5
(2.7)
P 		4425.3
(2)
P 		3089.9
(-1.6)
P 		3332.9
(-0.9)
P 		2543.5
(-3)
P 		2273
C 4533.3
(2.7)
P 		4627.7
(3)
P 		3783.5
(0.7)
P 		2486.1
(-2.7)
P 		2386.5
(-3)
P 		2416.3
(-2.9)
P 		2241
avr 3965.2
(1.3) 		4689.5
(3) 		4064.6
(1.5) 		2888.4
(-1.3) 		2694.1
(-1.8) 		2191.4
(-3) 		2498
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1175
Sequence Type Exemplar sequence
Representative Public ID W02D3.5 NCBI
Target Description W02D3.5 /REP_DB=WormBase Gene ID /WP=CE14426 /GEN=lbp-6 /TR=O01812 /GB=AAK21484.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059525 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-6) (lbp-6) mRNA, complete cds. 11/11 None
SNAP00000042716 ENSEMBL cdna:SNAP chromosome:CEL140:I:6736539:6737500:-1 11/11 None
GENEFINDER00000042730 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6736539:6737500:-1 11/11 None
W02D3.5.2 ENSEMBL cdna:known chromosome:CEL140:I:6736421:6737510:-1 gene:W02D3.5 11/11 None
W02D3.5.1 ENSEMBL cdna:known chromosome:CEL140:I:6736430:6737512:-1 gene:W02D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6736467-6737429(-) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid-binding protein
Gene Symbol lbp-6
Ensembl W02D3.5
Entrez Gene 172390 Entrez gene
SwissProt O01812 EMBL-EBI
WormBase CE14426 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17445.1.S1_S_AT similar to Fatty acid-binding protein, adipocyte (AFABP) (Adipocyte lipid-binding protein) (ALBP) (A-FABP) cfa
CANINE_2:CFA.20795.1.S1_AT similar to Fatty acid-binding protein, adipocyte (AFABP) (Adipocyte lipid-binding protein) (ALBP) (A-FABP) (P2 adipocyte protein) (Myelin P2 protein homolog) (3T3-L1 lipid binding protein) (422 protein) (P15) cfa
CANINE_2:CFAAFFX.17445.1.S1_S_AT similar to Fatty acid-binding protein, adipocyte (AFABP) (Adipocyte lipid-binding protein) (ALBP) (A-FABP) (P2 adipocyte protein) (Myelin P2 protein homolog) (3T3-L1 lipid binding protein) (422 protein) (P15) cfa
CHICKEN:GGA.4939.1.S1_S_AT fatty acid binding protein 4, adipocyte gga
HG-U133_PLUS_2:203980_AT fatty acid binding protein 4, adipocyte hs
HG-U133A:203980_AT fatty acid binding protein 4, adipocyte hs
HG-FOCUS:203980_AT fatty acid binding protein 4, adipocyte hs
HG-U133A_2:203980_AT fatty acid binding protein 4, adipocyte hs
HUGENEFL:J02874_AT fatty acid binding protein 4, adipocyte hs
U133_X3P:G4557578_3P_AT fatty acid binding protein 4, adipocyte hs
HG-U95AV2:38430_AT fatty acid binding protein 4, adipocyte hs
HG-U95E:76163_AT fatty acid binding protein 4, adipocyte hs
HG-U133_PLUS_2:235978_AT Fatty acid binding protein 4, adipocyte hs
HG-U133B:235978_AT Fatty acid binding protein 4, adipocyte hs
U133_X3P:HS.117687.0.A1_3P_AT Fatty acid binding protein 4, adipocyte hs
MOUSE430A_2:1424155_AT fatty acid binding protein 4, adipocyte mm
MOE430A:1424155_AT fatty acid binding protein 4, adipocyte mm
MOUSE430_2:1424155_AT fatty acid binding protein 4, adipocyte mm
MU11KSUBA:K02109_F_AT fatty acid binding protein 4, adipocyte mm
MU11KSUBB:MSA.376.0_F_AT fatty acid binding protein 4, adipocyte mm
MU11KSUBB:MSA.4454.0_F_AT fatty acid binding protein 4, adipocyte mm
MG-U74AV2:100567_AT fatty acid binding protein 4, adipocyte mm
MOE430A:1451263_A_AT fatty acid binding protein 4, adipocyte mm
MOUSE430A_2:1451263_A_AT fatty acid binding protein 4, adipocyte mm
MOUSE430_2:1451263_A_AT fatty acid binding protein 4, adipocyte mm
MOE430A:1417023_A_AT fatty acid binding protein 4, adipocyte mm
MOUSE430A_2:1417023_A_AT fatty acid binding protein 4, adipocyte mm
MOUSE430_2:1417023_A_AT fatty acid binding protein 4, adipocyte mm
MOUSE430_2:1425809_AT Fatty acid binding protein 4, adipocyte (Fabp4), mRNA mm
MOE430A:1425809_AT Fatty acid binding protein 4, adipocyte (Fabp4), mRNA mm
MOUSE430A_2:1425809_AT Fatty acid binding protein 4, adipocyte (Fabp4), mRNA mm
MU19KSUBB:TC34329_AT Fatty acid binding protein 4, adipocyte (Fabp4), mRNA mm
RG-U34A:RC_AI169612_AT fatty acid binding protein 4, adipocyte rn
RAE230A:1368271_A_AT fatty acid binding protein 4, adipocyte rn
RAT230_2:1368271_A_AT fatty acid binding protein 4, adipocyte rn
RG-U34B:RC_AI030436_AT Fatty acid binding protein 4, adipocyte rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21484 Lipid binding protein protein 6 [Caenorhabditis elegans] ref|NP_491926.1| Lipid Binding Protein family member (lbp-6) [Caenorhabditis elegans] sp|O01812|FABP6_CAEEL Fatty acid-binding protein homolog 1.0E-63
blast CAE67266 Hypothetical protein CBG12713 [Caenorhabditis briggsae] 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 7.0E-33
Sequence
Target Sequence 
>C. ELEGANS:192988_AT
atgtctcaagaattcgttggacgctggaagctcattcactcagagaacttcgaggagtac
atgaaggaggttggagttggattgatcactcgtaaggctgctgccaacttgaagccaact
ttggaaatcaaggtcgaaggagatttgtggtattccaaccaatactccacattcaagaac
accactctttctttcaagttgggacaggaattcgatgagaccactccagatggccgtacc
gtcaagtcagttgtcaacttcgagaacggaaaattcattcacattcaaaagaagatcaag
gactctgataaggaatcaattatcacccgttggctcgaaggagacaagcttatcactact
cttgaatctggatccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCAAGAATTCGTTGGACGCT 51 49 13 Antisense
GACGCTGGAAGCTCATTCACTCAGA 228 381 32 Antisense
GATTGATCACTCGTAAGGCTGCTGC 526 433 92 Antisense
AGGCTGCTGCCAACTTGAAGCCAAC 98 53 107 Antisense
GTGGTATTCCAACCAATACTCCACA 624 489 159 Antisense
TACTCCACATTCAAGAACACCACTC 431 647 175 Antisense
ACACCACTCTTTCTTTCAAGTTGGG 356 109 191 Antisense
TCGATGAGACCACTCCAGATGGCCG 41 603 224 Antisense
AATTATCACCCGTTGGCTCGAAGGA 18 177 330 Antisense
AGGAGACAAGCTTATCACTACTCTT 680 55 351 Antisense
CACTACTCTTGAATCTGGATCCGTT 569 197 366 Antisense
Sequence Source Affymetrix Proprietary Database