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[192986_at]

Description F37B12.4 /REP_DB=WormBase Gene ID /WP=CE09996 /TR=O01049 /GB=CAA90957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster 6grp_total > 46      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 17.3
(3)
A 		15.4
(1.1)
A 		11.4
(-3)
A 		14.9
(0.6)
A 		6
B 10
(-1.3)
A 		7.5
(-3)
A 		16.3
(3)
A 		7.5
(-3)
A 		9
C 22.3
(-0.7)
A 		8.8
(-3)
A 		43.3
(3)
A 		25.5
(-0.1)
A 		35
avr 16.5
(-0.3) 		10.6
(-3) 		23.7
(3) 		16
(-0.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 9.7
(-2.7)
A 		68.6
(3)
A 		6.6
(-3)
A 		11.3
(-2.5)
A 		22.5
(-1.5)
A 		34.7
(-0.3)
A 		62
B 46.9
(3)
A 		8.5
(-3)
A 		29.2
(0.2)
A 		22.5
(-0.8)
A 		20.4
(-1.1)
A 		11.6
(-2.5)
A 		38
C 8.5
(-3)
A 		13.9
(-2.2)
A 		8.6
(-3)
A 		8.8
(-3)
A 		10.6
(-2.7)
A 		47.2
(3)
A 		39
avr 21.7
(-0.4) 		30.3
(2.7) 		14.8
(-2.8) 		14.2
(-3) 		17.8
(-1.7) 		31.2
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.3
(3)
A 		3.3
(-1.4)
A 		3
(-1.8)
A 		2.2
(-3)
A 		4
B 3.2
(1.4)
A 		1.8
(-2.5)
A 		3.8
(3)
A 		1.6
(-3)
A 		2
C 7.4
(-0.7)
A 		2.5
(-3)
A 		15.1
(3)
A 		4.3
(-2.1)
A 		13
avr 5.6
(0.9) 		2.5
(-3) 		7.3
(3) 		2.7
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		24.4
(3)
A 		1.4
(-3)
A 		2.9
(-2.6)
A 		6.8
(-1.6)
A 		8.4
(-1.2)
A 		23
B 16.3
(3)
A 		2.8
(-3)
A 		7.1
(-1.1)
A 		6
(-1.6)
A 		8.3
(-0.6)
A 		4.3
(-2.3)
A 		14
C 3.1
(-2.4)
A 		4.3
(-1.9)
A 		2.2
(-2.8)
A 		1.8
(-3)
A 		3.4
(-2.3)
A 		15.8
(3)
A 		14
avr 7.1
(0) 		10.5
(3) 		3.6
(-3) 		3.6
(-3) 		6.2
(-0.7) 		9.5
(2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2872
Sequence Type Exemplar sequence
Representative Public ID F37B12.4 NCBI
Target Description F37B12.4 /REP_DB=WormBase Gene ID /WP=CE09996 /TR=O01049 /GB=CAA90957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063530(11), NM_063531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063530 NCBI Caenorhabditis elegans T24B8.7b (T24B8.7) mRNA, complete cds. 11/11 None
NM_063531 NCBI Caenorhabditis elegans T24B8.7a (T24B8.7) mRNA, complete cds. 11/11 None
F37B12.4 ENSEMBL cdna:known chromosome:CEL140:II:9042686:9047402:-1 gene:F37B12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9042682-9047399(-) 98.95 100.0
Public Domain and Genome References
Ensembl F37B12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92762 Hypothetical protein T24B8.7b [Caenorhabditis elegans] emb|CAA90960.2| Hypothetical protein T24B8.7b [Caenorhabditis elegans] ref|NP_495931.2| T24B8.7b [Caenorhabditis elegans] 0.0
blast CAA92761 Hypothetical protein T24B8.7a [Caenorhabditis elegans] emb|CAA90959.2| Hypothetical protein T24B8.7a [Caenorhabditis elegans] ref|NP_495932.2| T24B8.7a [Caenorhabditis elegans] 0.0
blast CAE59792 Hypothetical protein CBG03252 [Caenorhabditis briggsae] 0.0
blast CAE59791 Hypothetical protein CBG03251 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 6.1E-9
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192986_AT
ggagcctgccttctgaagaacttgatgtgggtcggaattgcagaagatgacgatacagtt
gaaccaggggttttgccagtgatgttggagtggaaagaaacggattataccaaataccgt
aaaatgaatgaagcattatttaacattcgaatcattaagcatccagaactccgtgctgtt
ctcctgagatgtagcaaacggttccgttcaatattcaaaatgtcatatgccgaaaatgac
attgacagtgatgaaccaatggatgaaagtgatgaagtaatgatcggaccacagctcctc
aagagagccacaaactccactgatctgacaaggtacgttttaggttatcttcacaacaga
gaactctggtatttcaaaaaatacattttccgttacaggtctgctgttccaagtgcttgc
gccacagcccgagtgattgaaacgaaggaaattaatttggaagaagatcttaaagctaat
ttgtctgctgcaagccttgaaatgacagagcaaccttcattggaagaagttctgagtgtc
gattcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCTGCCTTCTGAAGAACTTGA 59 523 3694 Antisense
GAACCAGGGGTTTTGCCAGTGATGT 658 345 3754 Antisense
TAAGCATCCAGAACTCCGTGCTGTT 638 637 3849 Antisense
CCGTGCTGTTCTCCTGAGATGTAGC 170 265 3864 Antisense
AGTAATGATCGGACCACAGCTCCTC 640 61 3969 Antisense
AAGAGAGCCACAAACTCCACTGATC 673 153 3994 Antisense
TACATTTTCCGTTACAGGTCTGCTG 200 643 4075 Antisense
TACAGGTCTGCTGTTCCAAGTGCTT 38 645 4087 Antisense
TGCGCCACAGCCCGAGTGATTGAAA 89 585 4111 Antisense
GCTAATTTGTCTGCTGCAAGCCTTG 193 303 4168 Antisense
AAGAAGTTCTGAGTGTCGATTCCTC 369 151 4217 Antisense
Sequence Source Affymetrix Proprietary Database