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[192985_s_at]

Description F59C12.2 /REP_DB=WormBase Gene ID /WP=CE28481 /TR=Q21034 /GB=AAK29709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor, family 1
Cluster 6grp_total > 09      4grp_total > 06      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 75.3
(-3)
A 		75
(-3)
A 		132
(0.7)
A 		166.6
(3)
A 		92
B 123.2
(3)
A 		81.9
(-2.8)
A 		80.2
(-3)
A 		98.8
(-0.4)
A 		43
C 105.3
(0.4)
A 		48.5
(-3)
A 		56.2
(-2.5)
A 		147.3
(3)
A 		99
avr 101.3
(-0.2) 		68.5
(-3) 		89.5
(-1.2) 		137.6
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 79.4
(1.2)
A 		67.5
(0)
A 		37.7
(-3)
A 		97.3
(3)
A 		69.4
(0.2)
A 		77.5
(1)
A 		60
B 84.6
(3)
A 		19.2
(-3)
A 		44
(-0.7)
A 		47
(-0.4)
A 		48.7
(-0.3)
A 		37.7
(-1.3)
A 		65
C 71.6
(3)
A 		57
(0.3)
A 		67
(2.1)
A 		69.3
(2.6)
A 		41
(-2.7)
A 		39.2
(-3)
A 		32
avr 78.5
(3) 		47.9
(-3) 		49.6
(-2.7) 		71.2
(1.6) 		53
(-2) 		51.5
(-2.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 27.4
(0.7)
A 		16.3
(-3)
A 		34.5
(3)
A 		24.4
(-0.3)
A 		18
B 39.3
(3)
A 		20.2
(-2.5)
A 		18.6
(-3)
A 		21.1
(-2.3)
A 		21
C 34.8
(3)
A 		14
(-3)
A 		19.6
(-1.4)
A 		24.8
(0.1)
A 		21
avr 33.8
(3) 		16.8
(-3) 		24.2
(-0.4) 		23.4
(-0.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14.6
(-0.7)
A 		24
(2.7)
A 		8.2
(-3)
A 		24.7
(3)
A 		21
(1.7)
A 		18.9
(0.9)
A 		17
B 29.4
(3)
A 		6.4
(-3)
A 		10.7
(-1.9)
A 		12.5
(-1.4)
A 		19.8
(0.5)
A 		14.1
(-1)
A 		23
C 26.5
(3)
A 		17.4
(-1.1)
A 		17.1
(-1.2)
A 		13.9
(-2.6)
A 		13.3
(-2.9)
A 		13.1
(-3)
A 		13
avr 23.5
(3) 		15.9
(-1) 		12
(-3) 		17
(-0.4) 		18
(0.1) 		15.4
(-1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192985_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18033
Sequence Type Exemplar sequence
Representative Public ID F59C12.2 NCBI
Target Description F59C12.2 /REP_DB=WormBase Gene ID /WP=CE28481 /TR=Q21034 /GB=AAK29709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor, family 1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029557(11), NM_001029558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029557 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-1) (ser-1) mRNA, complete cds. 11/11 None
NM_001029558 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-1) (ser-1) mRNA, complete cds. 11/11 None
SNAP00000016441 ENSEMBL cdna:SNAP chromosome:CEL140:X:16581919:16587375:1 11/11 None
GENEFINDER00000016446 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16581919:16587375:1 11/11 None
F59C12.2 ENSEMBL cdna:known chromosome:CEL140:X:16579636:16587614:1 gene:F59C12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16581918-16587375(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29709 Serotonin/octopamine receptor family protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024728.1| SERotonin/octopamine receptor family member (ser-1) [Caenorhabditis elegans] gb|AAC15827.1| serotonin receptor [Caenorhabditis elegans] 0.0
blast AAX88827 Serotonin/octopamine receptor family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024729.1| SERotonin/octopamine receptor family member (ser-1) [Caenorhabditis elegans] gb|AAC15778.1| serotonin receptor [Caenorhabditis elegans] 0.0
blast T29877 hypothetical protein F59C12.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.3E-83
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.3E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024728.1 7 58-80,93-115,130-152,171-193,213-235,373-395,408-430
NP_001024729.1 7 10-32,45-67,82-104,123-145,165-187,325-347,360-382
F59C12.2 7 58-80,93-115,130-152,171-193,213-235,373-395,408-430
SNAP00000016441 7 10-32,45-67,82-104,123-145,165-187,325-347,360-382
GENEFINDER00000016446 7 10-32,45-67,82-104,123-145,165-187,325-347,360-382
Sequence
Target Sequence 
>C. ELEGANS:192985_S_AT
atcaagaacgcacgacctctgttatcacacgcgacgagactcgttcagcaagaagcagtg
aacggccggagcccagcagagcaagatctgaaatttcagaagagccagtcgccagaacca
atggaaaattgactagtgaaaagaagaagatctccctcccatcattcccccgtgtgagct
catcccgtgattcgcgcgcaacgacagaggcatcaaccaccgacgaggaaaccaagccac
ttatcccaaaatcaacagttccggcaacagtgatcaacatccccgaacaactgatcaacc
caatcaaaaagtcactgaccacaataatcaacatgccactgctggatgagacaattcccg
agaaagctcaagtccaccataaaagccagacgcttctcacctcatcaacactaaatttcg
caactttttcaacgtgcccacagcagccgacaagatcctactcttgcgtggactgcaaaa
aagccgagaaaatgttgtcttcggatgttagtgacatgatgaccacttccacggcgagca
ctgcgtcgacagtcaacggagctccacggaaacatctaactcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGAACGCACGACCTCTGTTAT 588 25 1352 Antisense
GTTATCACACGCGACGAGACTCGTT 497 447 1372 Antisense
TGATTCGCGCGCAACGACAGAGGCA 453 563 1539 Antisense
GGCATCAACCACCGACGAGGAAACC 199 535 1560 Antisense
GAGGAAACCAAGCCACTTATCCCAA 488 403 1576 Antisense
ATAAAAGCCAGACGCTTCTCACCTC 425 25 1730 Antisense
TTCTCACCTCATCAACACTAAATTT 694 689 1745 Antisense
TTCGCAACTTTTTCAACGTGCCCAC 416 697 1768 Antisense
GCCGACAAGATCCTACTCTTGCGTG 233 285 1797 Antisense
TGCGTCGACAGTCAACGGAGCTCCA 429 583 1893 Antisense
AGCTCCACGGAAACATCTAACTCTA 303 81 1911 Antisense
Sequence Source Affymetrix Proprietary Database