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[192977_s_at] Yeast hypothetical 50.5 KD protein like

Description C27H6.2 /REP_DB=WormBase Gene ID /WP=CE08426 /TR=O17607 /GB=CAB02793.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical 50.5 KD protein like
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 74      6grp_total > 89      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 1190.3
(3)
P 		825.6
(-1.5)
P 		970.4
(0.3)
P 		702.8
(-3)
P 		488
B 1177.2
(2.3)
P 		994.3
(-0.6)
P 		1221.9
(3)
P 		838.2
(-3)
P 		384
C 1111.4
(1.5)
P 		941.1
(-0.2)
P 		1265.2
(3)
P 		651.3
(-3)
P 		614
avr 1159.6
(3) 		920.3
(-0.3) 		1152.5
(2.9) 		730.8
(-3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 508.6
(-3)
P 		832.7
(0.6)
P 		531.1
(-2.7)
P 		671.5
(-1.2)
P 		786
(0.1)
P 		1046.5
(3)
P 		538
B 747
(1.8)
P 		536.6
(-3)
P 		678.7
(0.2)
P 		613.1
(-1.3)
P 		799.5
(3)
P 		736.9
(1.6)
P 		263
C 739.6
(2.6)
P 		571.4
(-2)
P 		680.5
(1)
P 		535.7
(-3)
P 		746.9
(2.8)
P 		753.7
(3)
P 		218
avr 665.1
(-1.5) 		646.9
(-2) 		630.1
(-2.4) 		606.8
(-3) 		777.5
(1.3) 		845.7
(3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 338
1 2 3 4 range
A 433.4
(3)
P 		179.2
(-1.6)
P 		253.7
(-0.3)
P 		102.9
(-3)
P 		331
B 375.4
(3)
P 		245.6
(-1)
P 		283.1
(0.2)
P 		178.6
(-3)
P 		197
C 367.9
(1.7)
P 		270.6
(-0.1)
P 		441
(3)
P 		109.8
(-3)
P 		331
avr 392.2
(3) 		231.8
(-0.7) 		325.9
(1.5) 		130.4
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 93.8
(-3)
P 		296.2
(3)
P 		115.7
(-2.4)
P 		170.3
(-0.7)
P 		237.2
(1.3)
P 		254.8
(1.8)
P 		202
B 259.9
(0.6)
P 		178.6
(-2.4)
P 		164.8
(-2.9)
P 		162.4
(-3)
P 		324.8
(3)
P 		274.8
(1.2)
P 		162
C 274.1
(3)
P 		174.3
(-0.6)
P 		173.2
(-0.6)
P 		107.7
(-3)
P 		241.7
(1.8)
P 		252.3
(2.2)
P 		166
avr 209.3
(0.1) 		216.4
(0.4) 		151.2
(-2.8) 		146.8
(-3) 		267.9
(3) 		260.6
(2.6) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192977_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11532
Sequence Type Exemplar sequence
Representative Public ID C27H6.2 NCBI
Target Description C27H6.2 /REP_DB=WormBase Gene ID /WP=CE08426 /TR=O17607 /GB=CAB02793.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical 50.5 KD protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073166(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073166 NCBI Caenorhabditis elegans RUVB (recombination protein) homolog family member (ruvb-1) (ruvb-1) mRNA, complete cds. 11/11 None
SNAP00000032971 ENSEMBL cdna:SNAP chromosome:CEL140:V:9981618:9983278:-1 11/11 None
GENEFINDER00000032982 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9981618:9983278:-1 11/11 None
C27H6.2 ENSEMBL cdna:known chromosome:CEL140:V:9981376:9983339:-1 gene:C27H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9981617-9983278(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical 50.5 KD protein like
Gene Symbol ruvb-1
Ensembl C27H6.2
Entrez Gene 179388 Entrez gene
SwissProt O17607 EMBL-EBI
WormBase CE08426 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249938_AT TATA box-binding protein-interacting protein-related at
CANINE_2:CFA.1681.1.S1_AT similar to RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associated protein 54-a... cfa
CANINE_2:CFAAFFX.7092.1.S1_S_AT similar to RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associated protein 54-a... cfa
CANINE_2:CFAAFFX.7094.1.S1_AT similar to RuvB-like 1 (49-kDa TATA box-binding protein-interacting protein) (49 kDa TBP-interacting protein) (TIP49a) (Pontin 52) (Nuclear matrix protein 238) (NMP 238) (54 kDa erythrocyte cytosolic protein) (ECP-54) (TIP60-associated protein 54-a... cfa
DROSOPHILA_2:1635279_AT pontin dm
DROSGENOME1:153627_AT pontin dm
CHICKEN:GGA.13120.1.S1_S_AT RuvB-like 1 (E. coli) gga
HG-U133A:201614_S_AT RuvB-like 1 (E. coli) hs
HG-U133_PLUS_2:201614_S_AT RuvB-like 1 (E. coli) hs
HG-FOCUS:201614_S_AT RuvB-like 1 (E. coli) hs
HG-U133A_2:201614_S_AT RuvB-like 1 (E. coli) hs
HU35KSUBB:RC_N81059_AT RuvB-like 1 (E. coli) hs
U133_X3P:G4506752_3P_S_AT RuvB-like 1 (E. coli) hs
HG-U95AV2:40124_AT RuvB-like 1 (E. coli) hs
MG-U74AV2:99537_AT RuvB-like protein 1 mm
MOE430A:1416585_AT RuvB-like protein 1 mm
MOUSE430A_2:1416585_AT RuvB-like protein 1 mm
MOUSE430_2:1416585_AT RuvB-like protein 1 mm
MG-U74AV2:160874_R_AT RuvB-like protein 1, mRNA (cDNA clone MGC:5718 IMAGE:3582426) mm
RG-U34A:AB002406_AT RuvB-like protein 1 rn
RAE230A:1370386_AT RuvB-like protein 1 rn
RAT230_2:1370386_AT RuvB-like protein 1 rn
RG-U34A:RC_AI043861_AT Ribosomal protein s25 rn
YEAST_2:1779055_AT Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02793 Hypothetical protein C27H6.2 [Caenorhabditis elegans] ref|NP_505567.1| RUVB (recombination protein) homolog family member (ruvb-1) [Caenorhabditis elegans] 0.0
blast CAE72292 Hypothetical protein CBG19422 [Caenorhabditis briggsae] 0.0
blast AAH71316 RuvB-like 1 [Danio rerio] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR010339 EMBL-EBI TIP49, C-terminal 1.0E-126
Pfam IPR010339 EMBL-EBI TIP49, C-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192977_S_AT
aaacgtgtctttgcatgatctggatatcgcaaatgcccgtccacaaggacgtcaaggaga
tgttagtaacattgtttcacagctgatgactccaaagaaaactgaagttactgatcgtct
tcgttctgaaatcaacaaagtagtcaacgaatacattgaaagtggagtggctgaactaat
gcctggtgttcttttcatcgacgaggttcatatgcttgacgtagaatgttttacctatct
ctatcgcgcgctcgagtccccaatggcacccgtcgtggtttttgcaactaaccgtggaac
cacaacagttcgtggactcggcgataaggcaccacatggaattcctccagaaatgctcga
tcggctgatgattattccaacgatgaagtataacgaagaagacatccggaagattctcgt
tcatcgtaccgaagctgaaaatgttcaattcgaagaaaaagcatttgatcttctaactcg
tctttgtgctcaaacgtgtggaagagaggtcattgaagtagaggacgtggaccgttgtac
caaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTGTCTTTGCATGATCTGGAT 163 127 774 Antisense
CTGGATATCGCAAATGCCCGTCCAC 539 239 793 Antisense
ATTGTTTCACAGCTGATGACTCCAA 452 5 844 Antisense
GATCGTCTTCGTTCTGAAATCAACA 457 417 886 Antisense
TAATGCCTGGTGTTCTTTTCATCGA 231 637 950 Antisense
AGAATGTTTTACCTATCTCTATCGC 408 75 996 Antisense
CACAACAGTTCGTGGACTCGGCGAT 274 195 1074 Antisense
TAAGGCACCACATGGAATTCCTCCA 317 637 1098 Antisense
AATTCCTCCAGAAATGCTCGATCGG 62 179 1113 Antisense
GATTCTCGTTCATCGTACCGAAGCT 567 431 1185 Antisense
GAGGACGTGGACCGTTGTACCAAAT 66 401 1294 Antisense
Sequence Source Affymetrix Proprietary Database