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[192976_at] serine/threonine protein phosphatase

Description C06A1.3 /REP_DB=WormBase Gene ID /WP=CE02116 /TR=SW:P48458 /GB=CAA90052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 88      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.4
(-3)
A 		12.8
(0.1)
A 		11.4
(-0.5)
A 		19.9
(3)
A 		15
B 11.9
(2)
A 		13.2
(3)
A 		5.5
(-3)
A 		12.5
(2.5)
A 		8
C 18
(2.5)
A 		10.7
(-1.4)
A 		7.8
(-3)
A 		18.9
(3)
A 		11
avr 11.8
(-0.6) 		12.2
(-0.3) 		8.2
(-3) 		17.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 23.6
(-3)
A 		32.4
(-2.5)
A 		36.7
(-2.3)
A 		60.2
(-1.1)
A 		93.2
(0.6)
A 		138.2
(3)
P 		115
B 29.9
(-1.8)
A 		5
(-3)
A 		44.2
(-1.1)
A 		10
(-2.8)
A 		72.9
(0.4)
A 		126.2
(3)
P 		121
C 10.9
(-2.8)
A 		37.3
(-1.6)
A 		7.5
(-3)
A 		12.8
(-2.8)
A 		84.1
(0.5)
A 		138.5
(3)
P 		131
avr 21.5
(-3) 		24.9
(-2.8) 		29.5
(-2.6) 		27.7
(-2.7) 		83.4
(0.3) 		134.3
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2
(-3)
A 		2.8
(1.8)
A 		3
(3)
A 		2.9
(2.4)
A 		1
B 3.8
(3)
A 		3.3
(1.8)
A 		1.3
(-3)
A 		2.7
(0.4)
A 		3
C 6
(3)
A 		3.1
(-2.3)
A 		2.7
(-3)
A 		3.2
(-2.1)
A 		3
avr 3.9
(3) 		3.1
(0) 		2.3
(-3) 		2.9
(-0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 4.4
(-3)
A 		11.5
(-1.5)
A 		8
(-2.3)
A 		15.3
(-0.8)
A 		28.1
(1.9)
A 		33.7
(3)
P 		29
B 10.4
(-1.9)
A 		1.7
(-3)
A 		10.7
(-1.8)
A 		2.7
(-2.9)
A 		29.6
(0.7)
A 		47.1
(3)
P 		45
C 4
(-2.7)
A 		11.4
(-1.7)
A 		1.9
(-3)
A 		2.6
(-2.9)
A 		27.2
(0.4)
A 		46.4
(3)
P 		45
avr 6.3
(-3) 		8.2
(-2.7) 		6.9
(-2.9) 		6.9
(-2.9) 		28.3
(0.7) 		42.4
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3554
Sequence Type Exemplar sequence
Representative Public ID C06A1.3 NCBI
Target Description C06A1.3 /REP_DB=WormBase Gene ID /WP=CE02116 /TR=SW:P48458 /GB=CAA90052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063875 NCBI Caenorhabditis elegans C06A1.3 (C06A1.3) mRNA, complete cds. 11/11 None
SNAP00000011344 ENSEMBL cdna:SNAP chromosome:CEL140:II:10572289:10573926:1 11/11 None
GENEFINDER00000011352 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10572225:10573926:1 11/11 None
C06A1.3 ENSEMBL cdna:known chromosome:CEL140:II:10572182:10573957:1 gene:C06A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10572221-10573923(+) 100.0 100.0
chrII:12925929-12928154(-) 92.15 92.15
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl C06A1.3
Entrez Gene 174626 Entrez gene
SwissProt P48458 EMBL-EBI
WormBase CE02116 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90052 Hypothetical protein C06A1.3 [Caenorhabditis elegans] ref|NP_496276.1| C06A1.3 [Caenorhabditis elegans] sp|P48458|YT91_CAEEL Putative serine/threonine protein phosphatase C06A1.3 in chromosome II 0.0
blast CAA90052 Hypothetical protein C06A1.3 [Caenorhabditis elegans] ref|NP_496276.1| C06A1.3 [Caenorhabditis elegans] sp|P48458|YT91_CAEEL Putative serine/threonine protein phosphatase C06A1.3 in chromosome II 1.0E-178
blast CAB04521 Hypothetical protein F58G1.3 [Caenorhabditis elegans] ref|NP_496754.2| F58G1.3 [Caenorhabditis elegans] 1.0E-178
blast CAB04521 Hypothetical protein F58G1.3 [Caenorhabditis elegans] ref|NP_496754.2| F58G1.3 [Caenorhabditis elegans] 1.0E-174
blast CAE57467 Hypothetical protein CBG00433 [Caenorhabditis briggsae] 1.0E-169
blast CAE57467 Hypothetical protein CBG00433 [Caenorhabditis briggsae] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-38
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-38
Sequence
Target Sequence 
>C. ELEGANS:192976_AT
tccagtcatgcttcaaccgcatgccaatgtctgggttgatctcgaagagagtgctctgta
tgcacggtgggctctcaccggagctcatcaatctcgatacgatcaggaacattccacgtc
cgtgtgagccgctggatcgtggattgctcattgatttgttgtggtcggatccgacgaaca
agggagaaggatggttccattctatccgaggaatcagctacatgtttggtaaaggagtcg
tcgagcaggcatgcaagtccctggagattgatctgatcattcgcgctcatcaagtcgtcc
aggatggatatgaaatgatgactggacgccgtctgataactgtcttctcagtgccaaact
actgtgctcagttcaccaacgctgctgcagtggtttgcttgaacgctaacttgcagatct
cgttccaacaaatgatcccaccgccacttccggaaggcaccaaggccaaggcagctccgg
cgattgcaatcgatccaaacattgatgcggctcgtgctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGTCATGCTTCAACCGCATGCC 688 589 554 Antisense
ACCGCATGCCAATGTCTGGGTTGAT 412 87 569 Antisense
CTGTATGCACGGTGGGCTCTCACCG 499 237 609 Antisense
CCGCTGGATCGTGGATTGCTCATTG 171 263 682 Antisense
AGAAGGATGGTTCCATTCTATCCGA 435 75 738 Antisense
GTCGTCGAGCAGGCATGCAAGTCCC 594 471 790 Antisense
GATAACTGTCTTCTCAGTGCCAAAC 447 421 888 Antisense
AACGCTGCTGCAGTGGTTTGCTTGA 535 145 931 Antisense
GCTTGAACGCTAACTTGCAGATCTC 373 307 950 Antisense
AGCTCCGGCGATTGCAATCGATCCA 9 81 1026 Antisense
AAACATTGATGCGGCTCGTGCTGAC 470 127 1050 Antisense
Sequence Source Affymetrix Proprietary Database