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[192974_at] fatty acid-binding protein

Description W02D3.7 /REP_DB=WormBase Gene ID /WP=CE14430 /GEN=lbp-5 /TR=O01814 /GB=AAK21486.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 01      6grp_total > 16      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2571
1 2 3 4 range
A 1981
(0.7)
P 		2709.4
(2.9)
P 		2743.1
(3)
P 		783.4
(-3)
P 		1960
B 1964
(0.4)
P 		3012.3
(2.9)
P 		3059.8
(3)
P 		516.3
(-3)
P 		2544
C 1907.2
(0.2)
P 		3087.6
(3)
P 		3040.1
(2.9)
P 		595.3
(-3)
P 		2492
avr 1950.7
(0.4) 		2936.4
(3) 		2947.7
(3) 		631.7
(-3) 		2316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2226
1 2 3 4 5 6 range
A 2883.8
(3)
P 		2137.1
(0.4)
P 		2074.9
(0.1)
P 		1333.9
(-2.5)
P 		1182.4
(-3)
P 		1361.7
(-2.4)
P 		1701
B 3408.7
(3)
P 		2513.5
(0.5)
P 		1837.4
(-1.4)
P 		1251.2
(-3)
P 		1354.2
(-2.7)
P 		1696.2
(-1.8)
P 		2158
C 3180.2
(3)
P 		2358.4
(0.5)
P 		1329.9
(-2.7)
P 		1230.3
(-3)
P 		1253.8
(-2.9)
P 		1512
(-2.1)
P 		1950
avr 3157.6
(3) 		2336.3
(0.4) 		1747.4
(-1.5) 		1271.8
(-3) 		1263.5
(-3) 		1523.3
(-2.2) 		1894
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 959
1 2 3 4 range
A 721.3
(3)
P 		588.1
(1.7)
P 		717.1
(3)
P 		114.7
(-3)
P 		607
B 626.3
(1.9)
P 		744
(3)
P 		709
(2.7)
P 		110
(-3)
P 		634
C 631.3
(0.3)
P 		887.7
(1.9)
P 		1059.6
(3)
P 		100.4
(-3)
P 		959
avr 659.6
(1.6) 		739.9
(2.3) 		828.6
(3) 		108.4
(-3) 		720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 939
1 2 3 4 5 6 range
A 531.6
(-0.2)
P 		760.1
(3)
P 		451.9
(-1.3)
P 		338.3
(-2.9)
P 		356.8
(-2.6)
P 		331.5
(-3)
P 		429
B 1186.1
(3)
P 		836.6
(0.5)
P 		446.2
(-2.2)
P 		331.4
(-3)
P 		550.2
(-1.5)
P 		632.5
(-0.9)
P 		855
C 1178.8
(3)
P 		719.6
(0)
P 		338.5
(-2.4)
P 		247.4
(-3)
P 		405.7
(-2)
P 		506.2
(-1.3)
P 		931
avr 965.5
(3) 		772.1
(1.2) 		412.2
(-2) 		305.7
(-3) 		437.6
(-1.8) 		490.1
(-1.3) 		660
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1385
Sequence Type Exemplar sequence
Representative Public ID W02D3.7 NCBI
Target Description W02D3.7 /REP_DB=WormBase Gene ID /WP=CE14430 /GEN=lbp-5 /TR=O01814 /GB=AAK21486.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=fatty acid-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059527 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-5) (lbp-5) mRNA, complete cds. 11/11 None
SNAP00000042718 ENSEMBL cdna:SNAP chromosome:CEL140:I:6739464:6740403:-1 11/11 None
GENEFINDER00000042733 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6739464:6740403:-1 11/11 None
W02D3.7.1 ENSEMBL cdna:known chromosome:CEL140:I:6739401:6740404:-1 gene:W02D3.7 11/11 None
W02D3.7.2 ENSEMBL cdna:known chromosome:CEL140:I:6739406:6740414:-1 gene:W02D3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6739392-6740332(-) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid-binding protein
Gene Symbol lbp-5
Ensembl W02D3.7
Entrez Gene 191700 Entrez gene
SwissProt O01814 EMBL-EBI
WormBase CE14430 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584680_S_AT similar to Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty acid-binding protein) (Muscle fatty acid-binding protein) (M-FABP) (Mammary-derived growth inhibitor) (MDGI) cfa
CANINE_2:CFA.299.1.A1_AT similar to Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty acid-binding protein) (Muscle fatty acid-binding protein) (M-FABP) (Mammary-derived growth inhibitor) (MDGI) cfa
CANINE_2:CFA.299.1.A1_S_AT similar to Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty acid-binding protein) (Muscle fatty acid-binding protein) (M-FABP) (Mammary-derived growth inhibitor) (MDGI) cfa
CHICKEN:GGA.12266.1.S1_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) gga
HG-U133_PLUS_2:214285_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133A_2:214285_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133A:214285_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133_PLUS_2:205738_S_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133A:205738_S_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-FOCUS:205738_S_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133A_2:205738_S_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HUGENEFL:U57623_S_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
U133_X3P:G10938020_3P_A_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
U133_X3P:HS.49881.1.S1_3P_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U95AV2:34867_AT fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133_PLUS_2:231110_AT Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U133B:231110_AT Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U95B:58814_AT Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HG-U95E:68757_AT Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
HU35KSUBD:RC_AA609234_AT Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
U133_X3P:HS.112669.0.A1_3P_AT Fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) hs
MU11KSUBA:U02883_S_AT fatty acid binding protein 3, muscle and heart mm
MU11KSUBB:MSA.5727.0_F_AT fatty acid binding protein 3, muscle and heart mm
MU11KSUBB:MSA.12658.0_F_AT fatty acid binding protein 3, muscle and heart mm
MG-U74AV2:94214_AT fatty acid binding protein 3, muscle and heart mm
MG-U74BV2:164711_R_AT fatty acid binding protein 3, muscle and heart mm
MOE430A:1416023_AT fatty acid binding protein 3, muscle and heart mm
MOUSE430A_2:1416023_AT fatty acid binding protein 3, muscle and heart mm
MOUSE430_2:1416023_AT fatty acid binding protein 3, muscle and heart mm
MOE430B:1444844_AT Fatty acid binding protein 3, muscle and heart, mRNA (cDNA clone MGC:6249 IMAGE:3485639) mm
MOUSE430_2:1444844_AT Fatty acid binding protein 3, muscle and heart, mRNA (cDNA clone MGC:6249 IMAGE:3485639) mm
MU19KSUBA:TC14417_S_AT Fatty acid binding protein 3, muscle and heart, mRNA (cDNA clone MGC:6249 IMAGE:3485639) mm
RG-U34A:J02773_AT fatty acid binding protein 3 rn
RAE230A:1367660_AT fatty acid binding protein 3 rn
RAT230_2:1367660_AT fatty acid binding protein 3 rn
RAE230A:1376522_AT Fatty acid binding protein 3 rn
RAT230_2:1376522_AT Fatty acid binding protein 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21486 Lipid binding protein protein 5 [Caenorhabditis elegans] ref|NP_491928.1| Lipid Binding Protein family member (lbp-5) [Caenorhabditis elegans] sp|O01814|FABP5_CAEEL Fatty acid-binding protein homolog 3.0E-73
blast CAE67267 Hypothetical protein CBG12714 [Caenorhabditis briggsae] 7.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 6.9E-30
Sequence
Target Sequence 
>C. ELEGANS:192974_AT
gggtcgttggaagcttgtcgaatccgagaatttcgaggattacctgaaagaagttggggt
tggtcttcttcttcgtaaagccgcgtgtgctgcaaaaccaactttagagatcaaagtgaa
tggaaacaagtggcatgtcaatcaacttagcaccttcaagaacaccacattggagttcac
tctgggagtggaattcgacgagacaacaccagacggtcgtcaattcaagtcaaccatcac
aattgaagatggaaaagtagttcatgttcaaaaaaggattaaggattcagatcatgattc
tgtaatcactcgttggtttgaaggagaaaagctcatcacaactctccaatctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCGTTGGAAGCTTGTCGAATCC 569 491 33 Antisense
TCTTCGTAAAGCCGCGTGTGCTGCA 295 617 102 Antisense
CCGCGTGTGCTGCAAAACCAACTTT 423 261 113 Antisense
CATGTCAATCAACTTAGCACCTTCA 166 211 166 Antisense
CTTAGCACCTTCAAGAACACCACAT 656 221 178 Antisense
CACATTGGAGTTCACTCTGGGAGTG 538 193 198 Antisense
GGAATTCGACGAGACAACACCAGAC 368 533 222 Antisense
GAGACAACACCAGACGGTCGTCAAT 142 391 232 Antisense
GTCGTCAATTCAAGTCAACCATCAC 202 473 248 Antisense
GATTCTGTAATCACTCGTTGGTTTG 88 433 328 Antisense
CTCATCACAACTCTCCAATCTGGAT 233 229 364 Antisense
Sequence Source Affymetrix Proprietary Database