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[192973_s_at] troponin T-like protein

Description T22E5.5 /REP_DB=WormBase Gene ID /WP=CE04994 /GEN=mup-2 /TR=SW:Q27371 /GB=AAA83615.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=troponin T-like protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_high_8_8 > 53      6grp_highest_nonorm > 05      6grp_total > 23      4grp_total > 58      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14666
1 2 3 4 range
A 6089.5
(-0.6)
P 		14884.2
(3)
P 		11483.4
(1.6)
P 		329.4
(-3)
M 		14555
B 6287.4
(-0.3)
P 		11631
(2.1)
P 		13710.8
(3)
P 		218.6
(-3)
A 		13492
C 5842.6
(0)
P 		11286.9
(3)
P 		11285
(3)
P 		317.5
(-3)
P 		10969
avr 6073.2
(-0.2) 		12600.7
(3) 		12159.7
(2.8) 		288.5
(-3) 		12312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9373
1 2 3 4 5 6 range
A 11142.8
(3)
P 		8116.9
(0.9)
P 		7563.2
(0.5)
P 		6007.5
(-0.6)
P 		4873.6
(-1.3)
P 		2467
(-3)
P 		8676
B 10302.2
(3)
P 		9569
(2.4)
P 		9739.4
(2.6)
P 		5666.6
(-0.6)
P 		5333.7
(-0.8)
P 		2505.8
(-3)
P 		7796
C 9098.1
(2.7)
P 		9508.8
(3)
P 		7055.6
(1.1)
P 		4210.1
(-1.1)
P 		5671.5
(0)
P 		1770.1
(-3)
P 		7739
avr 10181
(3) 		9064.9
(2.2) 		8119.4
(1.4) 		5294.7
(-0.7) 		5292.9
(-0.7) 		2247.6
(-3) 		7933
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3887
1 2 3 4 range
A 2217.2
(1.1)
P 		3230.9
(3)
P 		3002
(2.6)
P 		48.2
(-3)
M 		3183
B 2005
(0.8)
P 		2872.6
(2.4)
P 		3177.1
(3)
P 		46.6
(-3)
A 		3131
C 1934.1
(-0.1)
P 		3245
(1.9)
P 		3933.2
(3)
P 		53.5
(-3)
P 		3880
avr 2052.1
(0.6) 		3116.2
(2.5) 		3370.8
(3) 		49.4
(-3) 		3321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2992
1 2 3 4 5 6 range
A 2054.1
(0.8)
P 		2886.8
(3)
P 		1647.1
(-0.3)
P 		1523.7
(-0.6)
P 		1470.6
(-0.7)
P 		600.6
(-3)
P 		2286
B 3584.7
(3)
P 		3185.1
(2.1)
P 		2365
(0.2)
P 		1500.9
(-1.7)
P 		2167
(-0.2)
P 		934.4
(-3)
P 		2650
C 3372.3
(3)
P 		2901.4
(2)
P 		1795.8
(-0.4)
P 		846.6
(-2.5)
P 		1835.2
(-0.3)
P 		592.5
(-3)
P 		2780
avr 3003.7
(3) 		2991.1
(3) 		1936
(0.2) 		1290.4
(-1.5) 		1824.3
(-0.1) 		709.2
(-3) 		2295
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192973_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17127
Sequence Type Exemplar sequence
Representative Public ID T22E5.5 NCBI
Target Description T22E5.5 /REP_DB=WormBase Gene ID /WP=CE04994 /GEN=mup-2 /TR=SW:Q27371 /GB=AAA83615.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=troponin T-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076675 NCBI Caenorhabditis elegans MUscle Positioning family member (mup-2) (mup-2) mRNA, complete cds. 11/11 None
SNAP00000012235 ENSEMBL cdna:SNAP chromosome:CEL140:X:6408654:6410163:-1 11/11 None
GENEFINDER00000012238 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6408654:6410163:-1 11/11 None
T22E5.5.2 ENSEMBL cdna:known chromosome:CEL140:X:6408419:6410182:-1 gene:T22E5.5 11/11 None
T22E5.5.1 ENSEMBL cdna:known chromosome:CEL140:X:6408419:6410314:-1 gene:T22E5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6408653-6410163(-) 100.0 100.0
Public Domain and Genome References
Gene Title troponin T-like protein
Gene Symbol mup-2
Ensembl T22E5.5
Entrez Gene 180914 Entrez gene
SwissProt Q27371 EMBL-EBI
WormBase CE04994 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5861 troponin complex inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83615 Muscle positioning protein 2 [Caenorhabditis elegans] ref|NP_509076.1| MUscle Positioning family member (mup-2) [Caenorhabditis elegans] sp|Q27371|TNNT_CAEEL Troponin T gb|AAA86906.1| troponin T 1.0E-152
blast CAE61253 Hypothetical protein CBG05057 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 3.3E-9
Sequence
Target Sequence 
>C. ELEGANS:192973_S_AT
caagagaaacttcttggccgccgtctgccgtgtacaagacgtctctggacttcttccaaa
cgatttgaaggagagaatcagaggccttcatgctcgtatcgtcaagctcgaggctgagaa
gtacgacttggagaagagacgtgaacgtcaagactatgacatgaaagagttacacgagcg
tcaacgtcaagccgcccgtaacaaggctctcaagaagggacttgacccagaggaggctgc
ttcctctgtccatccaccaaagatcaccaccgcttctaagttcgaccgtcaaaccgacag
aagatcttacggagaccgtcggtacttgttcgagaacccagaagaggagaagcaggcttc
cctcgtccgcggaaccggacgaccaccagcagagtggggacgcaagcaaaacgaagaact
cgagcagatccgcaaaaacttggagccaccaaagtacgttgagcaggtcaaggttgaggg
agccagagcaccagtcgagccagtcccactcttcgttccaactgatgacttcgagccaca
acaagtcaccgaggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAGAAACTTCTTGGCCGCCGTC 41 183 642 Antisense
TACAAGACGTCTCTGGACTTCTTCC 439 639 674 Antisense
GAGAATCAGAGGCCTTCATGCTCGT 204 391 714 Antisense
TTCATGCTCGTATCGTCAAGCTCGA 29 689 728 Antisense
GCTTCTAAGTTCGACCGTCAAACCG 460 305 913 Antisense
GAGACCGTCGGTACTTGTTCGAGAA 545 387 953 Antisense
AGAGGAGAAGCAGGCTTCCCTCGTC 660 67 984 Antisense
GAAGAACTCGAGCAGATCCGCAAAA 168 341 1054 Antisense
TTGAGGGAGCCAGAGCACCAGTCGA 654 701 1115 Antisense
GTTCCAACTGATGACTTCGAGCCAC 184 441 1156 Antisense
GAGCCACAACAAGTCACCGAGGATC 92 385 1174 Antisense
Sequence Source Affymetrix Proprietary Database