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[192969_at] member of worm-specific protein family

Description F31F6.3 /REP_DB=WormBase Gene ID /WP=CE05775 /TR=Q19944 /GB=CAA93750.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster 6grp_total > 19      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 7.3
(0.7)
A 		8.1
(3)
A 		6.1
(-2.7)
A 		6
(-3)
A 		2
B 27.4
(1.7)
A 		28.7
(2)
A 		2.9
(-3)
A 		33.9
(3)
A 		31
C 4.6
(-3)
A 		32.9
(-0.6)
A 		4.3
(-3)
A 		76.2
(3)
A 		72
avr 13.1
(-1.5) 		23.2
(0.3) 		4.4
(-3) 		38.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 5.1
(-2.4)
A 		19.1
(0.9)
A 		2.3
(-3)
A 		25.7
(2.4)
A 		28.2
(3)
A 		5.3
(-2.3)
A 		26
B 4.1
(-2.2)
A 		4
(-2.2)
A 		13.9
(3)
A 		2.5
(-3)
A 		5.4
(-1.5)
A 		3.9
(-2.3)
A 		11
C 33.2
(3)
A 		4.1
(-2.6)
A 		10.3
(-1.4)
A 		5.9
(-2.3)
A 		2
(-3)
A 		6.7
(-2.1)
A 		31
avr 14.1
(3) 		9.1
(-0.4) 		8.8
(-0.6) 		11.4
(1.2) 		11.9
(1.5) 		5.3
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.7
(3)
A 		1.8
(0)
A 		1.6
(-0.7)
A 		0.9
(-3)
A 		2
B 8.7
(3)
A 		7.1
(1.8)
A 		0.7
(-3)
A 		7.2
(1.9)
A 		8
C 1.5
(-3)
A 		9.5
(1.2)
A 		1.5
(-3)
A 		12.9
(3)
A 		11
avr 4.3
(0.2) 		6.1
(2.1) 		1.3
(-3) 		7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.9
(-2.7)
A 		6.8
(1.7)
A 		0.5
(-3)
A 		6.5
(1.5)
A 		8.5
(3)
A 		1.3
(-2.4)
A 		8
B 1.4
(-1.4)
A 		1.3
(-1.7)
A 		3.4
(3)
A 		0.7
(-3)
A 		2.2
(0.3)
A 		1.5
(-1.2)
A 		3
C 12.3
(3)
A 		1.3
(-2.6)
A 		2.6
(-2)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		2.2
(-2.2)
A 		12
avr 4.9
(3) 		3.1
(-0.4) 		2.2
(-2.1) 		2.8
(-0.9) 		3.8
(0.9) 		1.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17368
Sequence Type Exemplar sequence
Representative Public ID F31F6.3 NCBI
Target Description F31F6.3 /REP_DB=WormBase Gene ID /WP=CE05775 /TR=Q19944 /GB=CAA93750.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078069 NCBI Caenorhabditis elegans F31F6.3 (F31F6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000015877 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14869523:14872778:-1 11/11 None
SNAP00000015864 ENSEMBL cdna:SNAP chromosome:CEL140:X:14871753:14872778:-1 11/11 None
F31F6.3 ENSEMBL cdna:known chromosome:CEL140:X:14871753:14872778:-1 gene:F31F6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015875 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14871752-14872778(-) 100.0 100.0
Public Domain and Genome References
Gene Title member of worm-specific protein family
Ensembl F31F6.3
Entrez Gene 185177 Entrez gene
SwissProt Q19944 EMBL-EBI
WormBase CE05775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93749 Hypothetical protein F31F6.2 [Caenorhabditis elegans] ref|NP_510469.1| F31F6.2 [Caenorhabditis elegans] 1.0E-169
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-162
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-155
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 1.0E-120
blast CAA93749 Hypothetical protein F31F6.2 [Caenorhabditis elegans] ref|NP_510469.1| F31F6.2 [Caenorhabditis elegans] 1.0E-100
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:192969_AT
gtgggaagataaaatcggtcagccaatttcgaacggttttcttcttggctcgatcccaac
ttttctaccacttgtcaccgatttccattgaaaaggattttgaaaatattttccaacagt
actttggtaagctgtcgatgcatcattgtctggaacgtacggaaactctcaacaagcttt
ttgccggatgctctgtggaggaatttgcgtcagcggagaatgttatgagttttggaaact
ctcgtgaactttctggcagaagcgttgatgtgcgaccaaaccatagagttcttgaagtgg
ctcgcggaactatgatgagctcttcagaaatttcgccaaacaagagtgactcatcagttc
tgttgaataaatcgccgccaaccaattcgccaattatcaaatttggcacctacccgaaga
tccatctgcaaaacgtttctagctcaatgctcaacgcgagacgtcgacagctcactgcca
cagtcacaaccgtagattctcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGAAGATAAAATCGGTCAGCCA 356 489 332 Antisense
TTTTTGCCGGATGCTCTGTGGAGGA 183 675 509 Antisense
TGTGGAGGAATTTGCGTCAGCGGAG 95 555 525 Antisense
ACTTTCTGGCAGAAGCGTTGATGTG 270 103 579 Antisense
GCGTTGATGTGCGACCAAACCATAG 184 291 593 Antisense
GAACTATGATGAGCTCTTCAGAAAT 689 349 638 Antisense
TTGAATAAATCGCCGCCAACCAATT 247 703 694 Antisense
CCTACCCGAAGATCCATCTGCAAAA 162 269 740 Antisense
CCATCTGCAAAACGTTTCTAGCTCA 172 271 753 Antisense
GCCACAGTCACAACCGTAGATTCTC 505 279 808 Antisense
CAGTCACAACCGTAGATTCTCAAAA 595 207 812 Antisense
Sequence Source Affymetrix Proprietary Database