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[192966_at] Zinc finger, C3HC4 type (RING finger)

Description H08M01.1 /REP_DB=WormBase Gene ID /WP=CE16170 /TR=O45610 /GB=CAB07633.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 79      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.2
(-3)
A 		4.8
(3)
A 		3.8
(0.7)
A 		3.9
(0.9)
A 		3
B 2.7
(-3)
A 		2.9
(-0.6)
A 		2.9
(-0.6)
A 		3.2
(3)
A 		1
C 3.2
(0.5)
A 		4.2
(3)
A 		1.8
(-3)
A 		3.2
(0.5)
A 		2
avr 2.7
(-3) 		4
(3) 		2.8
(-2.5) 		3.4
(0.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 4.1
(0.7)
A 		2.9
(-2.5)
A 		2.9
(-2.5)
A 		2.7
(-3)
A 		3.4
(-1.2)
A 		5
(3)
A 		2
B 2.7
(-1.2)
A 		3
(-0.3)
A 		2.6
(-1.5)
A 		2.1
(-3)
A 		2.8
(-0.9)
A 		4.1
(3)
A 		2
C 2.7
(-3)
A 		2.9
(-2.1)
A 		2.8
(-2.5)
A 		2.8
(-2.5)
A 		4
(3)
A 		3.5
(0.7)
A 		1
avr 3.2
(-0.5) 		2.9
(-1.6) 		2.8
(-1.9) 		2.5
(-3) 		3.4
(0.2) 		4.2
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.8
(0)
A 		1
(3)
A 		1
(3)
A 		0.6
(-3)
A 		0
B 0.9
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0
C 1.1
(2.1)
A 		1.2
(3)
A 		0.6
(-2.1)
A 		0.5
(-3)
A 		1
avr 0.9
(1.5) 		1
(3) 		0.8
(0) 		0.6
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-1)
A 		1
(1)
A 		0.6
(-3)
A 		0.7
(-2)
A 		1
(1)
A 		1.2
(3)
A 		1
B 1
(0)
A 		1
(0)
A 		0.6
(-2.4)
A 		0.5
(-3)
A 		1.2
(1.2)
A 		1.5
(3)
A 		1
C 1
(0.4)
A 		0.9
(-0.4)
A 		0.7
(-2.1)
A 		0.6
(-3)
A 		1.3
(3)
A 		1.2
(2.1)
A 		1
avr 0.9
(-0.4) 		1
(0.4) 		0.6
(-3) 		0.6
(-3) 		1.2
(2.1) 		1.3
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10328
Sequence Type Exemplar sequence
Representative Public ID H08M01.1 NCBI
Target Description H08M01.1 /REP_DB=WormBase Gene ID /WP=CE16170 /TR=O45610 /GB=CAB07633.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070264 NCBI Caenorhabditis elegans H08M01.1 (H08M01.1) mRNA, complete cds. 11/11 None
SNAP00000031787 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13834325:13836324:-1 11/11 None
GENEFINDER00000031796 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13834325:13836324:-1 11/11 None
H08M01.1 ENSEMBL cdna:known chromosome:CEL140:IV:13834325:13836324:-1 gene:H08M01.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13834330-13836330(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl H08M01.1
Entrez Gene 186708 Entrez gene
SwissProt O45610 EMBL-EBI
WormBase CE16170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07633 Hypothetical protein H08M01.1 [Caenorhabditis elegans] ref|NP_502665.1| H08M01.1 [Caenorhabditis elegans] 1.0E-178
blast CAB07633 Hypothetical protein H08M01.1 [Caenorhabditis elegans] ref|NP_502665.1| H08M01.1 [Caenorhabditis elegans] 1.0E-175
blast AAA85765 Hypothetical protein C34F11.1 [Caenorhabditis elegans] ref|NP_494977.1| C34F11.1 [Caenorhabditis elegans] 2.0E-10
blast CAE60252 Hypothetical protein CBG03826 [Caenorhabditis briggsae] 6.0E-10
blast CAE60252 Hypothetical protein CBG03826 [Caenorhabditis briggsae] 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:192966_AT
agacagcaaccggaacactcagctacatccacaatttctgctccactttctcctgcttca
tcaacaaatatggccctacaaaatgctccgagcgaccatggagaccaactcataagggat
tcttcagaagatcgtcaaaacgttcctgctccaagaagaagcgcgagaatcgcgtcacat
acgcaataccgaacgagtccatatgtgtctgcacgtcaaggccacaggctggcaattgct
cgtggcagagcagcacccggaaccttggatccatcagcttccagacagtcgatcccatct
acatcagatgcacctgttttagttccgcatgctcctcctgctccaccatctccaacttta
caagactgtgttatttgcatggaggagcctgtgaatccaaaagtttgcccgaaatgcctg
aagatgattggatgtgctaagtgtttcaggtggtggactgttttcaggtgttggtggcag
tcttctttaaatccatcatgtcccctgtgtcggctcaaatgggattctgcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAGCAACCGGAACACTCAGCTA 69 73 469 Antisense
ATATGGCCCTACAAAATGCTCCGAG 566 21 536 Antisense
AAGATCGTCAAAACGTTCCTGCTCC 618 155 596 Antisense
GAACGAGTCCATATGTGTCTGCACG 702 347 659 Antisense
CACAGGCTGGCAATTGCTCGTGGCA 421 193 691 Antisense
CGGAACCTTGGATCCATCAGCTTCC 598 241 726 Antisense
CATCAGCTTCCAGACAGTCGATCCC 338 213 740 Antisense
GATGCACCTGTTTTAGTTCCGCATG 281 413 775 Antisense
GGTGTTGGTGGCAGTCTTCTTTAAA 39 497 935 Antisense
GTCTTCTTTAAATCCATCATGTCCC 350 469 948 Antisense
GTCGGCTCAAATGGGATTCTGCCCC 659 471 977 Antisense
Sequence Source Affymetrix Proprietary Database