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[192964_at] member of worm-specific protein family

Description F31F6.1 /REP_DB=WormBase Gene ID /WP=CE05773 /TR=Q19942 /GB=CAA93748.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster 6grp_total > 58      4grp_total > 40      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.7
(-2.5)
A 		4.9
(-3)
A 		15.5
(3)
A 		9.3
(-0.5)
A 		11
B 5.1
(-1)
A 		5.1
(-1)
A 		5
(-3)
A 		5.3
(3)
A 		0
C 4
(-3)
A 		8.4
(3)
A 		4.1
(-2.9)
A 		4
(-3)
A 		4
avr 4.9
(-3) 		6.1
(-0.8) 		8.2
(3) 		6.2
(-0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.9
(-1.1)
A 		4.1
(-2)
A 		3.2
(-3)
A 		5.4
(-0.6)
A 		3.4
(-2.8)
A 		8.7
(3)
A 		6
B 6.3
(3)
A 		4.8
(-0.1)
A 		3.8
(-2.2)
A 		3.4
(-3)
A 		4
(-1.8)
A 		5.2
(0.7)
A 		3
C 4.4
(-2.1)
A 		3.5
(-3)
A 		3.9
(-2.6)
A 		4.2
(-2.3)
A 		3.5
(-3)
A 		9.2
(3)
A 		6
avr 5.2
(-0.7) 		4.1
(-2.3) 		3.6
(-3) 		4.3
(-2) 		3.6
(-3) 		7.7
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.1
(-1)
A 		1.1
(-3)
A 		4.1
(3)
A 		1.4
(-2.4)
A 		3
B 1.6
(3)
A 		1.3
(-0.6)
A 		1.2
(-1.8)
A 		1.1
(-3)
A 		1
C 1.3
(-0.9)
A 		2.4
(3)
A 		1.4
(-0.5)
A 		0.7
(-3)
A 		2
avr 1.7
(0.3) 		1.6
(-0.3) 		2.2
(3) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-2.1)
A 		1.5
(0.4)
A 		0.7
(-3)
A 		1.4
(-0)
A 		1
(-1.7)
A 		2.1
(3)
A 		1
B 2.2
(3)
A 		1.6
(0.2)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.6
(0.2)
A 		1.9
(1.6)
A 		1
C 1.6
(-1.1)
A 		1.1
(-2.5)
A 		1
(-2.7)
A 		0.9
(-3)
A 		1.1
(-2.5)
A 		3.1
(3)
A 		2
avr 1.6
(-0.2) 		1.4
(-1) 		0.9
(-3) 		1.1
(-2.2) 		1.2
(-1.8) 		2.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17830
Sequence Type Exemplar sequence
Representative Public ID F31F6.1 NCBI
Target Description F31F6.1 /REP_DB=WormBase Gene ID /WP=CE05773 /TR=Q19942 /GB=CAA93748.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=member of worm-specific protein family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078067 NCBI Caenorhabditis elegans F31F6.1 (F31F6.1) mRNA, complete cds. 11/11 None
SNAP00000015860 ENSEMBL cdna:SNAP chromosome:CEL140:X:14865318:14868217:-1 11/11 None
GENEFINDER00000015875 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14865636:14868217:-1 11/11 None
F31F6.1 ENSEMBL cdna:known chromosome:CEL140:X:14867018:14868217:-1 gene:F31F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14867017-14868217(-) 100.0 100.0
Public Domain and Genome References
Gene Title member of worm-specific protein family
Ensembl F31F6.1
Entrez Gene 185175 Entrez gene
SwissProt Q19942 EMBL-EBI
WormBase CE05773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93748 Hypothetical protein F31F6.1 [Caenorhabditis elegans] ref|NP_510468.1| F31F6.1 [Caenorhabditis elegans] 1.0E-179
blast CAA93748 Hypothetical protein F31F6.1 [Caenorhabditis elegans] ref|NP_510468.1| F31F6.1 [Caenorhabditis elegans] 1.0E-164
blast CAA93748 Hypothetical protein F31F6.1 [Caenorhabditis elegans] ref|NP_510468.1| F31F6.1 [Caenorhabditis elegans] 1.0E-163
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 1.0E-129
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 1.0E-116
blast CAA93745 Hypothetical protein C27C12.3 [Caenorhabditis elegans] emb|CAA93753.1| Hypothetical protein C27C12.3 [Caenorhabditis elegans] ref|NP_510467.1| C27C12.3 [Caenorhabditis elegans] 1.0E-106
blast CAA93750 Hypothetical protein F31F6.3 [Caenorhabditis elegans] ref|NP_510470.1| F31F6.3 [Caenorhabditis elegans] 1.0E-96
Sequence
Target Sequence 
>C. ELEGANS:192964_AT
tccacttggctcgatgcaaacttggcaaccgaatgtcaccgactttgattgaaaaggatt
ttgagaagattttccaacagtactttggcatgctgtcgatgcaacgtgttctgggacgta
caggaactctcgaccagctttttgccaaatgctcttttgaggaattgatgccggctgaga
atgttagaagtcttggaacccctgttgaactttctggcggaagcgttactgtgctaccac
accgtagagttctcgaagtgattcgcgagactatgagctcttcagatattctgccaaaca
agagtgagtcatcaattctgctggatggatccccatcaaccatttggtctgcctgtccca
atgattcgctggagttgcttcgcgctcgtcggttgaaaaaatatatccttcacagaggag
cagttagaggaaacagcgtgctcgaagcatctacatgctcaactccaaaggaagagattt
catttgttgacgtttccacctacatgaagaaccagcagcaccaagattctgccacaatgc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTTGGCTCGATGCAAACTTGG 224 589 371 Antisense
ACTTGGCAACCGAATGTCACCGACT 232 105 390 Antisense
TGGGACGTACAGGAACTCTCGACCA 127 553 482 Antisense
GACCAGCTTTTTGCCAAATGCTCTT 548 383 502 Antisense
TAGAAGTCTTGGAACCCCTGTTGAA 254 651 555 Antisense
TGGCGGAAGCGTTACTGTGCTACCA 710 543 585 Antisense
TGTGCTACCACACCGTAGAGTTCTC 83 555 600 Antisense
CATCAACCATTTGGTCTGCCTGTCC 656 213 704 Antisense
GCCTGTCCCAATGATTCGCTGGAGT 227 283 721 Antisense
GACGTTTCCACCTACATGAAGAACC 160 377 859 Antisense
AGCACCAAGATTCTGCCACAATGCC 394 77 887 Antisense
Sequence Source Affymetrix Proprietary Database