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[192963_at] Vertebrate galactoside-binding lectins

Description F46A8.4 /REP_DB=WormBase Gene ID /WP=CE10564 /TR=O01330 /GB=CAB04390.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster 6grp_total > 53      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6.8
(-0.1)
A 		9.5
(2.1)
A 		3.1
(-3)
A 		10.7
(3)
A 		8
B 4.7
(-3)
A 		8.3
(-2.6)
A 		41.3
(1.5)
A 		53
(3)
A 		48
C 29.4
(3)
A 		26
(1.9)
A 		10.7
(-3)
A 		22.4
(0.8)
A 		19
avr 13.6
(-3) 		14.6
(-2.6) 		18.4
(-1.1) 		28.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 7
(-2.4)
A 		2.9
(-2.9)
A 		52.3
(3)
A 		16.8
(-1.2)
A 		34.4
(0.9)
A 		2.1
(-3)
A 		50
B 5.4
(-2.7)
A 		5.9
(-2.6)
A 		49.8
(3)
A 		4.7
(-2.8)
A 		5.1
(-2.7)
A 		2.9
(-3)
A 		47
C 1.9
(-3)
A 		6.5
(-1.1)
A 		3.7
(-2.3)
A 		4.4
(-2)
A 		15.3
(2.5)
A 		16.5
(3)
A 		15
avr 4.8
(-3) 		5.1
(-2.9) 		35.3
(3) 		8.6
(-2.3) 		18.3
(-0.3) 		7.2
(-2.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(3)
A 		2.1
(1.6)
A 		0.8
(-3)
A 		1.6
(-0.2)
A 		2
B 1.5
(-3)
A 		2.1
(-2.6)
A 		9.6
(2)
A 		11.3
(3)
A 		10
C 9.7
(3)
A 		7.5
(0.8)
A 		3.7
(-3)
A 		3.8
(-2.9)
A 		6
avr 4.6
(-0.5) 		3.9
(-3) 		4.7
(-0.2) 		5.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.6)
A 		1
(-2.7)
A 		11.4
(3)
A 		4.3
(-0.9)
A 		10.4
(2.4)
A 		0.5
(-3)
A 		11
B 1.9
(-2.6)
A 		2
(-2.5)
A 		12.1
(3)
A 		1.3
(-2.9)
A 		2.1
(-2.5)
A 		1.1
(-3)
A 		11
C 0.7
(-3)
A 		2
(-1.4)
A 		0.9
(-2.8)
A 		0.9
(-2.8)
A 		5
(2.4)
A 		5.5
(3)
A 		5
avr 1.3
(-3) 		1.7
(-2.6) 		8.1
(3) 		2.2
(-2.2) 		5.8
(1) 		2.4
(-2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.369
Sequence Type Exemplar sequence
Representative Public ID F46A8.4 NCBI
Target Description F46A8.4 /REP_DB=WormBase Gene ID /WP=CE10564 /TR=O01330 /GB=CAB04390.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060483 NCBI Caenorhabditis elegans F46A8.4 (F46A8.4) mRNA, complete cds. 11/11 None
SNAP00000031220 ENSEMBL cdna:SNAP chromosome:CEL140:I:11249349:11250094:-1 11/11 None
F46A8.4 ENSEMBL cdna:known chromosome:CEL140:I:11249349:11250094:-1 gene:F46A8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031227 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11249279-11250025(-) 100.0 100.0
Public Domain and Genome References
Gene Title Vertebrate galactoside-binding lectins
Ensembl F46A8.4
Entrez Gene 185820 Entrez gene
SwissProt O01330 EMBL-EBI
WormBase CE10564 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04390 Hypothetical protein F46A8.4 [Caenorhabditis elegans] ref|NP_492884.1| F46A8.4 [Caenorhabditis elegans] 2.0E-88
blast AAF99966 Hypothetical protein F49F1.10 [Caenorhabditis elegans] ref|NP_500491.1| F49F1.10 [Caenorhabditis elegans] 3.0E-70
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:192963_AT
tcctctgattcttccgaagattacagtggacgacgtggtggagggcggcataggccccca
agacctccacggcctccacggccttcaaggcccgtatcaacccctaagccaagaggcgac
tggataacaatcaatggacctttcacaaccactctacctattcctggaggatattgggat
actgggaagatcatgcgaatatacggtattcctggaagcggaagatggaccatcaatctg
gtcaaatcaaaaacttgggtgttccatttcgcgtcagaacctaccaagggacttgtagcc
agaacccgatttacgaatggagcgtgggaagtcggagagacatatggtggaaacccattt
cgagctggtgcccagtttaatgttactatggtcaatcagccaacacatatcgagattcat
gtcaatggtgtatactttgtaaatttcaaacatcgagttcccaatccatccagagactat
caaggaattgatttccattttcgtttgtttctatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTGATTCTTCCGAAGATTACA 187 593 112 Antisense
TCCACGGCCTTCAAGGCCCGTATCA 374 589 186 Antisense
CCGTATCAACCCCTAAGCCAAGAGG 60 263 203 Antisense
AACCCCTAAGCCAAGAGGCGACTGG 692 145 210 Antisense
GGATAACAATCAATGGACCTTTCAC 421 511 233 Antisense
TCAATGGACCTTTCACAACCACTCT 202 633 242 Antisense
CCATTTCGAGCTGGTGCCCAGTTTA 9 271 466 Antisense
GCTGGTGCCCAGTTTAATGTTACTA 235 295 475 Antisense
AAATTTCAAACATCGAGTTCCCAAT 90 115 552 Antisense
GGAATTGATTTCCATTTTCGTTTGT 336 533 595 Antisense
TTCCATTTTCGTTTGTTTCTATCTC 375 699 604 Antisense
Sequence Source Affymetrix Proprietary Database