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[192962_at] bacterial regulatory protein UHPC like

Description T11G6.3 /REP_DB=WormBase Gene ID /WP=CE06429 /TR=Q22410 /GB=CAA93418.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bacterial regulatory protein UHPC like
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 17      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 685
1 2 3 4 range
A 326.1
(-3)
P 		495
(-1.2)
P 		538.8
(-0.7)
P 		884
(3)
P 		558
B 296.1
(-3)
P 		502.9
(-0.9)
P 		419.9
(-1.7)
P 		881.9
(3)
P 		586
C 241.8
(-3)
P 		503.8
(-0.7)
P 		459
(-1.1)
P 		926.9
(3)
P 		685
avr 288
(-3) 		500.6
(-0.9) 		472.6
(-1.2) 		897.6
(3) 		610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 534.4
(2.4)
P 		491.6
(1.3)
P 		465.8
(0.6)
P 		557.1
(3)
P 		489.2
(1.2)
P 		332
(-3)
P 		225
B 504
(0.8)
P 		505
(0.8)
P 		368.8
(-3)
P 		489.3
(0.4)
P 		582.8
(3)
P 		369.7
(-3)
P 		214
C 436.1
(0.3)
P 		539.7
(2.9)
P 		410.1
(-0.3)
P 		545.3
(3)
P 		371.6
(-1.3)
P 		300.2
(-3)
P 		245
avr 491.5
(1.8) 		512.1
(2.4) 		414.9
(-0.5) 		530.6
(3) 		481.2
(1.5) 		334
(-3) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 118.7
(-1)
P 		107.5
(-3)
P 		140.9
(3)
P 		129.4
(0.9)
P 		33
B 94.4
(-3)
P 		124.2
(-1.1)
P 		97.3
(-2.8)
P 		187.9
(3)
P 		94
C 80
(-3)
P 		144.9
(1.9)
P 		160
(3)
P 		156.3
(2.7)
P 		80
avr 97.7
(-3) 		125.5
(-0.2) 		132.7
(0.5) 		157.9
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 98.5
(-1.9)
P 		174.9
(3)
P 		101.4
(-1.7)
P 		141.3
(0.9)
P 		147.6
(1.3)
P 		80.8
(-3)
P 		94
B 175.4
(0.5)
P 		168.1
(0.2)
P 		89.6
(-3)
P 		129.6
(-1.4)
P 		236.8
(3)
P 		137.9
(-1)
P 		147
C 161.6
(2.7)
P 		164.7
(3)
P 		104.4
(-2.6)
P 		109.7
(-2.1)
P 		120.2
(-1.2)
P 		100.5
(-3)
P 		64
avr 145.2
(1) 		169.2
(3) 		98.5
(-3) 		126.9
(-0.6) 		168.2
(2.9) 		106.4
(-2.3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9669
Sequence Type Exemplar sequence
Representative Public ID T11G6.3 NCBI
Target Description T11G6.3 /REP_DB=WormBase Gene ID /WP=CE06429 /TR=Q22410 /GB=CAA93418.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=bacterial regulatory protein UHPC like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069610 NCBI Caenorhabditis elegans T11G6.3 (T11G6.3) mRNA, complete cds. 11/11 None
SNAP00000000766 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10852692:10855180:-1 11/11 None
GENEFINDER00000000779 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10852178:10855180:-1 11/11 None
T11G6.3 ENSEMBL cdna:known chromosome:CEL140:IV:10852652:10855283:-1 gene:T11G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10852697-10855186(-) 100.0 100.0
Public Domain and Genome References
Gene Title bacterial regulatory protein UHPC like
Ensembl T11G6.3
Entrez Gene 188430 Entrez gene
SwissProt Q22410 EMBL-EBI
WormBase CE06429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93418 Hypothetical protein T11G6.3 [Caenorhabditis elegans] ref|NP_502011.1| T11G6.3 [Caenorhabditis elegans] 0.0
blast CAE70838 Hypothetical protein CBG17618 [Caenorhabditis briggsae] 0.0
blast CAA93417 Hypothetical protein T11G6.2 [Caenorhabditis elegans] ref|NP_502012.2| T11G6.2 [Caenorhabditis elegans] 1.0E-179
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502011.1 12 23-41,74-96,108-127,137-159,172-194,199-221,264-286,301-320,327-346,351-373,393-415,425-447
T11G6.3 12 23-41,74-96,108-127,137-159,172-194,199-221,264-286,301-320,327-346,351-373,393-415,425-447
SNAP00000000766 12 23-41,74-96,108-127,137-159,172-194,199-221,264-286,301-320,327-346,351-373,393-415,425-447
GENEFINDER00000000779 12 23-41,74-96,108-127,137-159,172-194,199-221,264-286,301-320,327-346,351-373,393-415,425-447
Sequence
Target Sequence 
>C. ELEGANS:192962_AT
ttggctaccattttacttgcacaatggactcaactggaaagaatccacggctgatggtct
tgctgcctggtatgatgttggaggaatcatttcgtccattattgcaggagcactttcgga
tagaatgaaatcgagaacaatacttgttttcacaatgcttctcttttccacagttaccct
atttgcgtatgcccattcaccaatatcttactactggaatgcattcattcttcttattgt
tggattcttcattggaggtccacttaatatgattgccggatgcattacttcagatcttgg
tagatctgaaatgctacgtggcaacgcagaagccctttcaacagtaactggaataattga
tggtactggaagtgttggctctgcaattggtcaatggctaatcccattggtacgaaattg
gcttggatgggatgccatattctacgggtttatgattatggttgtgtgttctgctctatg
catttctccagttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCTACCATTTTACTTGCACAAT 349 709 855 Antisense
GAATCCACGGCTGATGGTCTTGCTG 79 331 895 Antisense
GGTCTTGCTGCCTGGTATGATGTTG 524 503 910 Antisense
GGAATCATTTCGTCCATTATTGCAG 518 533 937 Antisense
TTTCCACAGTTACCCTATTTGCGTA 169 669 1019 Antisense
TATTTGCGTATGCCCATTCACCAAT 469 661 1034 Antisense
GTGGCAACGCAGAAGCCCTTTCAAC 564 491 1172 Antisense
GGTACTGGAAGTGTTGGCTCTGCAA 90 505 1216 Antisense
GGGATGCCATATTCTACGGGTTTAT 410 495 1283 Antisense
ATTATGGTTGTGTGTTCTGCTCTAT 340 13 1309 Antisense
TGCTCTATGCATTTCTCCAGTTATA 434 581 1326 Antisense
Sequence Source Affymetrix Proprietary Database