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[192960_at] Vertebrate galactoside-binding lectins

Description T02G6.7 /REP_DB=WormBase Gene ID /WP=CE18178 /TR=O62353 /GB=CAB04668.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 70      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 43      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 154.3
(-1.5)
P 		197.9
(3)
P 		141.2
(-2.9)
P 		140
(-3)
P 		58
B 163.6
(-0.5)
P 		223
(3)
P 		196.5
(1.4)
P 		121.7
(-3)
P 		101
C 146.5
(-1.8)
P 		206.9
(3)
P 		130.9
(-3)
P 		155.8
(-1)
P 		76
avr 154.8
(-1.7) 		209.3
(3) 		156.2
(-1.5) 		139.2
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 154.6
(1)
P 		106.7
(-3)
P 		107.4
(-2.9)
P 		149.5
(0.6)
P 		178.9
(3)
P 		131.1
(-1)
P 		72
B 136.3
(1)
P 		152.5
(2.8)
P 		153.9
(3)
P 		100.7
(-3)
P 		134
(0.8)
P 		119.6
(-0.9)
P 		53
C 101.3
(-3)
P 		180.3
(0.3)
P 		102.2
(-3)
P 		246.2
(3)
P 		120.9
(-2.2)
P 		109
(-2.7)
P 		145
avr 130.7
(-1.6) 		146.5
(0.5) 		121.2
(-2.8) 		165.5
(3) 		144.6
(0.2) 		119.9
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 56.2
(3)
P 		43
(0.8)
P 		36.9
(-0.2)
P 		20.5
(-3)
P 		36
B 52.2
(2.4)
P 		55.1
(3)
P 		45.5
(1)
P 		25.9
(-3)
P 		29
C 48.5
(1)
P 		59.5
(3)
P 		45.6
(0.5)
P 		26.3
(-3)
P 		33
avr 52.3
(3) 		52.5
(3) 		42.7
(0.9) 		24.2
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 28.5
(-2)
P 		38
(-0.1)
P 		23.4
(-3)
P 		37.9
(-0.2)
P 		54
(3)
P 		31.9
(-1.3)
P 		31
B 47.4
(1.5)
P 		50.8
(2.2)
P 		37.4
(-0.7)
P 		26.7
(-3)
P 		54.4
(3)
P 		44.6
(0.9)
P 		28
C 37.6
(-0.6)
P 		55
(3)
P 		26
(-3)
P 		49.5
(1.9)
P 		39.1
(-0.3)
P 		36.5
(-0.8)
P 		29
avr 37.8
(-0.4) 		47.9
(2.6) 		28.9
(-3) 		38
(-0.3) 		49.2
(3) 		37.7
(-0.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2332
Sequence Type Exemplar sequence
Representative Public ID T02G6.7 NCBI
Target Description T02G6.7 /REP_DB=WormBase Gene ID /WP=CE18178 /TR=O62353 /GB=CAB04668.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Vertebrate galactoside-binding lectins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060604 NCBI Caenorhabditis elegans T02G6.7 (T02G6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000017977 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11832826:11836596:-1 10/11 None
T02G6.7 ENSEMBL cdna:known chromosome:CEL140:I:11835671:11836741:-1 gene:T02G6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017972 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11835601-11836672(-) 100.0 100.0
Public Domain and Genome References
Gene Title Vertebrate galactoside-binding lectins
Ensembl T02G6.7
Entrez Gene 188001 Entrez gene
SwissProt O62353 EMBL-EBI
WormBase CE18178 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04668 Hypothetical protein T02G6.7 [Caenorhabditis elegans] ref|NP_493005.1| T02G6.7 [Caenorhabditis elegans] 1.0E-151
blast CAB04668 Hypothetical protein T02G6.7 [Caenorhabditis elegans] ref|NP_493005.1| T02G6.7 [Caenorhabditis elegans] 1.0E-105
blast CAB03925 Hypothetical protein C27C7.5 [Caenorhabditis elegans] ref|NP_492918.1| C27C7.5 [Caenorhabditis elegans] 1.0E-46
blast CAB03925 Hypothetical protein C27C7.5 [Caenorhabditis elegans] ref|NP_492918.1| C27C7.5 [Caenorhabditis elegans] 3.0E-37
blast CAB04377 Hypothetical protein F41D3.6 [Caenorhabditis elegans] ref|NP_493095.1| F41D3.6 [Caenorhabditis elegans] 9.0E-25
blast CAA88850 Hypothetical protein C44F1.3 [Caenorhabditis elegans] ref|NP_497763.1| gaLECtin family member (lec-4) [Caenorhabditis elegans] 8.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 3.8E-7
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.1E-8
Sequence
Target Sequence 
>C. ELEGANS:192960_AT
aaacaacaaatgcccttcggatccacttgatttgttcccgatgaagatggaaagcccctt
gataaactttctagacttcaagtataatattacatttgacggtgaaatatggaacttcaa
atataattgtaggtttattcaaactttcataatgatatatatctttacttgcacagctaa
atcaaatggtggattagcccttccgtacatgagtcgaattccgaaaacacagtttaacga
ggggcaaagtatatttctgtcagcgatcccattaattagccagtggtcgttgaatttggt
tgcacctaatggagacctcctttttcatttcaatccacgtcccaatgctaaatttgtggt
ccgcgcaacactgcttgacggtgtgtggggagcatctgaagaggacggcggatggccgtt
cacgccaaattctcaatttaatatgacaattgtgaatcaagtagccgctctgcaaattca
tatcaatcaagtgttttttacaagctacacacatcggacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAACAAATGCCCTTCGGATCCA 265 129 222 Antisense
TTCGGATCCACTTGATTTGTTCCCG 363 695 237 Antisense
AGCCCCTTGATAAACTTTCTAGACT 486 83 274 Antisense
AGCCCTTCCGTACATGAGTCGAATT 126 77 417 Antisense
TCAGCGATCCCATTAATTAGCCAGT 408 625 481 Antisense
AATGGAGACCTCCTTTTTCATTTCA 244 163 529 Antisense
CAATCCACGTCCCAATGCTAAATTT 65 183 552 Antisense
CCGCGCAACACTGCTTGACGGTGTG 140 263 582 Antisense
TGGCCGTTCACGCCAAATTCTCAAT 474 543 634 Antisense
GTAGCCGCTCTGCAAATTCATATCA 491 457 682 Antisense
ACAAGCTACACACATCGGACTTCAA 427 113 721 Antisense
Sequence Source Affymetrix Proprietary Database