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[192956_at] glutathione S-transferase

Description F11G11.3 /REP_DB=WormBase Gene ID /WP=CE07056 /GEN=gst-6 /TR=P91252 /GB=AAB37845.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutathione S-transferase
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 12      6grp_total > 23      4grp_total > 49      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 929.4
(-3)
P 		1407.1
(3)
P 		1125.1
(-0.5)
P 		1062.3
(-1.3)
P 		478
B 1023.7
(-1.7)
P 		1095.8
(-0.9)
P 		1437.7
(3)
P 		909.1
(-3)
P 		529
C 931.4
(-3)
P 		1296.9
(3)
P 		1212.2
(1.6)
P 		1002.6
(-1.8)
P 		366
avr 961.5
(-3) 		1266.6
(3) 		1258.3
(2.8) 		991.3
(-2.4) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2862
1 2 3 4 5 6 range
A 3271.5
(3)
P 		1707.4
(-0.3)
P 		2867.2
(2.2)
P 		1875.7
(0.1)
P 		1190.9
(-1.4)
P 		409.2
(-3)
P 		2862
B 3136.5
(3)
P 		2258.3
(0.8)
P 		2733.8
(2)
P 		2258.1
(0.8)
P 		1174.1
(-1.9)
P 		721.5
(-3)
P 		2415
C 2699.9
(3)
P 		2304.1
(1.8)
P 		2154.8
(1.4)
P 		2360.1
(2)
P 		902.4
(-2.3)
P 		659.1
(-3)
P 		2041
avr 3036
(3) 		2089.9
(0.7) 		2585.3
(1.9) 		2164.6
(0.9) 		1089.1
(-1.8) 		596.6
(-3) 		2439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 338.4
(3)
P 		305.4
(1.9)
P 		294.1
(1.5)
P 		155.5
(-3)
P 		183
B 326.4
(2.7)
P 		270.6
(0.3)
P 		333.1
(3)
P 		193.7
(-3)
P 		139
C 308.3
(0.3)
P 		372.9
(1.8)
P 		422.5
(3)
P 		169.1
(-3)
P 		253
avr 324.4
(2.1) 		316.3
(1.9) 		349.9
(3) 		172.8
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 992
1 2 3 4 5 6 range
A 603.1
(2.8)
P 		607.2
(2.8)
P 		624.4
(3)
P 		475.7
(1.3)
P 		359.4
(-0)
P 		99.6
(-3)
P 		525
B 1091.3
(3)
P 		751.7
(0.5)
P 		663.9
(-0.1)
P 		598.1
(-0.6)
P 		477
(-1.5)
P 		269
(-3)
P 		822
C 1000.7
(3)
P 		703
(0.7)
P 		548.4
(-0.5)
P 		474.6
(-1)
P 		292
(-2.5)
P 		220.6
(-3)
P 		780
avr 898.4
(3) 		687.3
(1.2) 		612.2
(0.6) 		516.1
(-0.3) 		376.1
(-1.5) 		196.4
(-3) 		702
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5780
Sequence Type Exemplar sequence
Representative Public ID F11G11.3 NCBI
Target Description F11G11.3 /REP_DB=WormBase Gene ID /WP=CE07056 /GEN=gst-6 /TR=P91252 /GB=AAB37845.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062481 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-6) (gst-6) mRNA, complete cds. 11/11 None
SNAP00000005489 ENSEMBL cdna:SNAP chromosome:CEL140:II:4879902:4880971:1 10/11 None
GENEFINDER00000005493 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4879902:4880971:1 10/11 None
F11G11.3 ENSEMBL cdna:known chromosome:CEL140:II:4879877:4881057:1 gene:F11G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4879812-4880969(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-6
Ensembl F11G11.3
Entrez Gene 173841 Entrez gene
SwissProt P91252 EMBL-EBI
WormBase CE32622 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494882 Glutathione S-Transferase family member (gst-6) [Caenorhabditis elegans] gb|AAB37845.2| Glutathione s-transferase protein 6 [Caenorhabditis elegans] sp|P91252|GST6_CAEEL Probable glutathione S-transferase 6 (GST class-sigma) 1.0E-115
blast T29984 hypothetical protein F11G11.3 - Caenorhabditis elegans 1.0E-115
blast CAE58991 Hypothetical protein CBG02264 [Caenorhabditis briggsae] emb|CAE56958.1| Hypothetical protein CBG24808 [Caenorhabditis briggsae] 5.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.9E-19
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:192956_AT
gaaatggttcactacaagctcgtctacttcccattaagagcccgtgctgaaattgctcga
caaatctttgcctatgcaggacaggattattccgaggagaatctgagctttgaacaatgg
ccagcacgcaaaaataacactccattcggtcaattgccaattttggaagtcgatggaaaa
ccattgggacagtcatatgcaattgctcggtacttggccagagagttcggaattgctgga
caaaatgacaccgaggcggcagaagtggatgcaattgctgatcaattcaaggattatctc
aacgatgtctccccatatttaacagttcttgctggattcaaacctggagacaaggatcaa
ctgagaactgatgtttttgttccagctttcaaaaagaatttcgagtttttcgagaacatt
ctggcatctaatcacagtggtttctttgttggaaactctttgacatgggtggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGGTTCACTACAAGCTCGTCT 626 361 97 Antisense
CTTCCCATTAAGAGCCCGTGCTGAA 168 219 123 Antisense
GAAATTGCTCGACAAATCTTTGCCT 705 361 145 Antisense
GCTTTGAACAATGGCCAGCACGCAA 97 305 203 Antisense
AATAACACTCCATTCGGTCAATTGC 409 171 229 Antisense
TATGCAATTGCTCGGTACTTGGCCA 298 657 292 Antisense
AGGATTATCTCAACGATGTCTCCCC 571 57 386 Antisense
GTCTCCCCATATTTAACAGTTCTTG 262 471 403 Antisense
CAGTTCTTGCTGGATTCAAACCTGG 493 205 419 Antisense
GAGAACATTCTGGCATCTAATCACA 313 391 508 Antisense
GGAAACTCTTTGACATGGGTGGATC 454 527 547 Antisense
Sequence Source Affymetrix Proprietary Database