[Home] | [Total List]

[192953_s_at] oligopeptide transporter

Description C06G8.2 /REP_DB=WormBase Gene ID /WP=CE05230 /GEN=pep-1 /TR=SW:Q17758 /GB=CAA94323.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=oligopeptide transporter
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 83      6grp_total > 94      4grp_total > 30      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 429
(3)
P 		309.8
(-3)
P 		347.5
(-1.1)
P 		401.4
(1.6)
P 		119
B 425.3
(3)
P 		391.4
(1.5)
P 		285.4
(-3)
P 		384.3
(1.2)
P 		140
C 410.7
(3)
P 		320.3
(-1)
P 		273.4
(-3)
P 		332.6
(-0.4)
P 		137
avr 421.7
(3) 		340.5
(-1.1) 		302.1
(-3) 		372.8
(0.5) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1010
1 2 3 4 5 6 range
A 421
(-0.6)
P 		354.4
(-1.1)
P 		129.4
(-3)
P 		397
(-0.8)
P 		857.6
(3)
P 		623.9
(1.1)
P 		728
B 350.1
(-1.9)
P 		393.7
(-1.4)
P 		244.4
(-3)
P 		465.7
(-0.6)
P 		800.4
(3)
P 		511.4
(-0.1)
P 		556
C 404.4
(-2.3)
P 		421.9
(-2.2)
P 		314.8
(-3)
P 		403
(-2.4)
P 		1139.8
(3)
P 		551.4
(-1.3)
P 		825
avr 391.8
(-1.6) 		390
(-1.6) 		229.5
(-3) 		421.9
(-1.4) 		932.6
(3) 		562.2
(-0.2) 		703
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 156.2
(3)
P 		67.2
(-2.5)
P 		90.8
(-1)
P 		58.8
(-3)
P 		97
B 135.6
(3)
P 		96.7
(-0.4)
P 		66.1
(-3)
P 		81.9
(-1.6)
P 		70
C 136
(3)
P 		92.1
(-0.3)
P 		95.3
(-0.1)
P 		56.1
(-3)
P 		80
avr 142.6
(3) 		85.3
(-1.5) 		84.1
(-1.6) 		65.6
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 77.6
(-1.7)
P 		126
(-0.5)
P 		28.2
(-3)
P 		100.7
(-1.1)
P 		258.8
(3)
P 		151.9
(0.2)
P 		231
B 121.8
(-1.6)
P 		131.1
(-1.4)
P 		59.4
(-3)
P 		123.4
(-1.6)
P 		325.2
(3)
P 		190.7
(-0)
P 		266
C 149.9
(-1.5)
P 		128.7
(-2)
P 		80.1
(-3)
P 		81
(-3)
P 		368.8
(3)
P 		184.6
(-0.8)
P 		289
avr 116.4
(-1.6) 		128.6
(-1.3) 		55.9
(-3) 		101.7
(-1.9) 		317.6
(3) 		175.7
(-0.3) 		262
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192953_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9542
Sequence Type Exemplar sequence
Representative Public ID C06G8.2 NCBI
Target Description C06G8.2 /REP_DB=WormBase Gene ID /WP=CE05230 /GEN=pep-1 /TR=SW:Q17758 /GB=CAA94323.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=oligopeptide transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069601 NCBI Caenorhabditis elegans OligoPeptide Transporter family member (opt-1) (opt-1) mRNA, complete cds. 11/11 None
SNAP00000028245 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10790652:10794390:1 11/11 None
GENEFINDER00000028247 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10790652:10794390:1 11/11 None
C06G8.2 ENSEMBL cdna:known chromosome:CEL140:IV:10790532:10794538:1 gene:C06G8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10790657-10794396(+) 100.0 100.0
Public Domain and Genome References
Gene Title oligopeptide transporter
Gene Symbol opt-1
Ensembl C06G8.2
Entrez Gene 177973 Entrez gene
SwissProt Q17758 EMBL-EBI
WormBase CE28887 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251882_AT proton-dependent oligopeptide transport (POT) family protein at
CANINE:1582534_AT solute carrier family 15 (oligopeptide transporter), member 1 cfa
CANINE_2:CFA.78.1.S1_S_AT solute carrier family 15 (oligopeptide transporter), member 1 cfa
DROSOPHILA_2:1627277_S_AT dm
DROSGENOME1:151495_AT dm
DROSOPHILA_2:1624796_AT dm
DROSGENOME1:142205_AT dm
CHICKEN:GGA.4106.1.S1_AT solute carrier family 15 (oligopeptide transporter), member 1 gga
HG-U133_PLUS_2:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-FOCUS:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A_2:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133_PLUS_2:207254_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A:207254_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A_2:207254_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HUGENEFL:U21936_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
U133_X3P:G4827007_3P_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
U133_X3P:G2506042_3P_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95AV2:31628_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95AV2:32906_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95C:56963_F_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95E:70856_R_AT Solute carrier family 15 (oligopeptide transporter), member 1 hs
MOUSE430_2:1419343_AT solute carrier family 15 (oligopeptide transporter), member 1 mm
MOE430A:1419343_AT solute carrier family 15 (oligopeptide transporter), member 1 mm
MOUSE430A_2:1419343_AT solute carrier family 15 (oligopeptide transporter), member 1 mm
YEAST_2:1777376_AT Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6857 oligopeptide transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
15198 oligopeptide transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94323 Hypothetical protein C06G8.2 [Caenorhabditis elegans] ref|NP_502002.1| OligoPeptide Transporter family member (opt-1) [Caenorhabditis elegans] sp|Q17758|OPT1_CAEEL Oligopeptide transporter 1 (Di-/tri-peptide transporter CPTA) 0.0
blast AAC39118 high-affinity peptide transporter [Caenorhabditis elegans] 0.0
blast T19017 hypothetical protein C06G8.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000109 EMBL-EBI TGF-beta receptor, type I/II extracellular region 1.0E-126
Pfam IPR000109 EMBL-EBI TGF-beta receptor, type I/II extracellular region 8.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502002.1 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
C06G8.2 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
SNAP00000028245 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
GENEFINDER00000028247 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
Sequence
Target Sequence 
>C. ELEGANS:192953_S_AT
taagtaatgctaaccctcttgacgtccatgacttttcaaaaaaatccactgtcaccgctt
ttggtagaacttattctccaattgaaatgaaaccaggaacatatcgcttattttatactg
atgatagtagaacgcatttcactccattgaatctcccgcctgtacagcaagaccatatgg
gaggacaatacttgattacggtatctacaagatctaaaaatgactcagaagtccttgcaa
caaccgagtctctcgtatcctacaatcgcgtcagcattctttggcaaattccacagtacg
tgattctgacagctggagaggttttgttcagtatcactggtcttgaattcgcttacaccg
aggcgtctcctcagttgaagtccgtggtacaggcactctggttgttcactactgccatcg
gagatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGTAATGCTAACCCTCTTGACGT 470 635 1748 Antisense
TCCACTGTCACCGCTTTTGGTAGAA 234 589 1792 Antisense
CGCATTTCACTCCATTGAATCTCCC 47 255 1880 Antisense
TCCCGCCTGTACAGCAAGACCATAT 117 597 1901 Antisense
GACTCAGAAGTCCTTGCAACAACCG 422 373 1969 Antisense
GCAACAACCGAGTCTCTCGTATCCT 26 319 1984 Antisense
TACAATCGCGTCAGCATTCTTTGGC 17 643 2008 Antisense
TGAATTCGCTTACACCGAGGCGTCT 182 575 2091 Antisense
CGAGGCGTCTCCTCAGTTGAAGTCC 363 247 2106 Antisense
GGTACAGGCACTCTGGTTGTTCACT 26 505 2133 Antisense
TGTTCACTACTGCCATCGGAGATCT 340 561 2150 Antisense
Sequence Source Affymetrix Proprietary Database