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[192951_at] Activin types I and II receptor domain

Description F25H9.1 /REP_DB=WormBase Gene ID /WP=CE09658 /TR=P91987 /GB=CAB02990.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Activin types I and II receptor domain
Cluster 6grp_total > 37      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.4
(-3)
A 		4.5
(-2)
A 		3.1
(-2.4)
A 		19.3
(3)
A 		18
B 3.5
(-1.3)
A 		4.2
(-0.7)
A 		1.4
(-3)
A 		8.8
(3)
A 		7
C 1.3
(-3)
A 		5.8
(0.6)
A 		1.5
(-2.8)
A 		8.7
(3)
A 		7
avr 2.1
(-2.9) 		4.8
(-1.4) 		2
(-3) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-2.1)
A 		2.9
(1.2)
A 		1.1
(-3)
A 		3.2
(1.8)
A 		1.3
(-2.5)
A 		3.7
(3)
A 		3
B 2.3
(2.3)
A 		0.9
(-3)
A 		1.9
(0.8)
A 		2.5
(3)
A 		2.5
(3)
A 		1.2
(-1.9)
A 		2
C 7.3
(3)
A 		3.5
(-0.6)
A 		1.6
(-2.3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		3.5
(-0.6)
A 		6
avr 3.7
(3) 		2.4
(-0.5) 		1.5
(-3) 		2.2
(-1.1) 		1.6
(-2.7) 		2.8
(0.5) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.5
(-3)
A 		1
(-1.7)
A 		0.8
(-2.2)
A 		2.8
(3)
A 		2
B 1.1
(0)
A 		1
(-0.4)
A 		0.3
(-3)
A 		1.9
(3)
A 		2
C 0.4
(-3)
A 		1.7
(3)
A 		0.5
(-2.5)
A 		1.5
(2.1)
A 		1
avr 0.7
(-2.3) 		1.2
(-0.4) 		0.5
(-3) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.3
(-2.3)
A 		1
(3)
A 		0.2
(-3)
A 		0.8
(1.5)
A 		0.4
(-1.5)
A 		0.9
(2.3)
A 		1
B 0.8
(1.3)
A 		0.3
(-3)
A 		0.5
(-1.3)
A 		0.7
(0.4)
A 		1
(3)
A 		0.5
(-1.3)
A 		1
C 2.7
(3)
A 		1.1
(-0.8)
A 		0.4
(-2.5)
A 		0.2
(-3)
A 		0.3
(-2.8)
A 		1.2
(-0.6)
A 		3
avr 1.3
(3) 		0.8
(-0.3) 		0.4
(-3) 		0.6
(-1.7) 		0.6
(-1.7) 		0.9
(0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14131
Sequence Type Exemplar sequence
Representative Public ID F25H9.1 NCBI
Target Description F25H9.1 /REP_DB=WormBase Gene ID /WP=CE09658 /TR=P91987 /GB=CAB02990.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Activin types I and II receptor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073935 NCBI Caenorhabditis elegans F25H9.1 (F25H9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000006469 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13456723:13460097:1 11/11 None
F25H9.1 ENSEMBL cdna:known chromosome:CEL140:V:13456225:13458038:1 gene:F25H9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006461 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13456224-13458038(+) 100.0 100.0
Public Domain and Genome References
Gene Title Activin types I and II receptor domain
Ensembl F25H9.1
Entrez Gene 184941 Entrez gene
SwissProt P91987 EMBL-EBI
WormBase CE09658 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4675 transmembrane receptor protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5024 transforming growth factor beta receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02990 Hypothetical protein F25H9.1 [Caenorhabditis elegans] ref|NP_506336.1| F25H9.1 [Caenorhabditis elegans] 0.0
blast CAB02990 Hypothetical protein F25H9.1 [Caenorhabditis elegans] ref|NP_506336.1| F25H9.1 [Caenorhabditis elegans] 1.0E-177
blast CAB02989 Hypothetical protein F25H9.3 [Caenorhabditis elegans] ref|NP_506337.1| F25H9.3 [Caenorhabditis elegans] 1.0E-168
blast CAH04726 Hypothetical protein C34B4.4 [Caenorhabditis elegans] ref|NP_001023697.1| C34B4.4 [Caenorhabditis elegans] 1.0E-114
blast CAB02989 Hypothetical protein F25H9.3 [Caenorhabditis elegans] ref|NP_506337.1| F25H9.3 [Caenorhabditis elegans] 6.0E-97
blast CAE62587 Hypothetical protein CBG06701 [Caenorhabditis briggsae] 3.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.6E-7
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.6E-7
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.8E-8
Sequence
Target Sequence 
>C. ELEGANS:192951_AT
ggagtcagcagatatcattttcgataccgacaatgtcatttttgatcgaattggtccaaa
cttcttttctgacgcttgttataatgtaacaatgaatccccaacaatacactgtgtattg
cagatgttcatatccaaattgtaacgacccagagaaagggctaccctatccgttctctcc
gcctaccattacatgttacacaagtggatacgatggaagagttaataatgcaaaatatga
tactccgaaacttgattatttcacaaattatgaaaatctaattaaaaatgagagctacta
cgatgaaggaatacaatgtcgagggcacttctgtttcataactatagtggaccatacttc
ttcaaataattcatactacaaaggatgtattacagcaaatgaacaaggagaacatcggat
tcagctgggacattcatacctgaatgatgttccatattacatttgtgacacggatttttg
caatctgaacattgaaactactctgaaagtggctacaaactctacagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCAGCAGATATCATTTTCGAT 487 517 471 Antisense
GAATTGGTCCAAACTTCTTTTCTGA 358 323 518 Antisense
ACTTCTTTTCTGACGCTTGTTATAA 558 103 530 Antisense
GAATCCCCAACAATACACTGTGTAT 653 329 564 Antisense
ATATCCAAATTGTAACGACCCAGAG 276 19 600 Antisense
GAGAAAGGGCTACCCTATCCGTTCT 613 377 622 Antisense
CTCCGCCTACCATTACATGTTACAC 229 235 647 Antisense
CAATGTCGAGGGCACTTCTGTTTCA 484 183 784 Antisense
GGAGAACATCGGATTCAGCTGGGAC 558 519 877 Antisense
GGATTCAGCTGGGACATTCATACCT 473 509 887 Antisense
GAAAGTGGCTACAAACTCTACAGAA 215 361 975 Antisense
Sequence Source Affymetrix Proprietary Database