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[192950_at] BTB (also known as BR-C/Ttk) domain.

Description Y75B12B.4 /REP_DB=WormBase Gene ID /WP=CE20373 /TR=Q9XWB9 /GB=CAA21761.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      6grp_highest_nonorm > 91      6grp_total > 87      4grp_total > 14      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 146.7
(-1.6)
P 		132.1
(-3)
M 		149.1
(-1.4)
A 		196.6
(3)
P 		65
B 211.6
(3)
P 		106.3
(-3)
A 		129.1
(-1.7)
A 		164
(0.3)
P 		105
C 161
(0.4)
P 		140.9
(-0.9)
A 		107.1
(-3)
A 		202.1
(3)
P 		95
avr 173.1
(1.6) 		126.4
(-3) 		128.4
(-2.8) 		187.6
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 202.2
(-1.6)
P 		159.7
(-3)
P 		168.9
(-2.7)
P 		209
(-1.4)
P 		293.3
(1.3)
P 		346.5
(3)
P 		187
B 167.4
(-2.3)
P 		125.5
(-3)
P 		129.8
(-2.9)
P 		238.7
(-1)
P 		292.4
(-0.1)
P 		473
(3)
P 		348
C 153.2
(-3)
P 		151.3
(-3)
P 		219.9
(-1.7)
P 		215.7
(-1.8)
P 		256.2
(-1)
P 		473.5
(3)
P 		322
avr 174.3
(-2.4) 		145.5
(-3) 		172.9
(-2.4) 		221.1
(-1.4) 		280.6
(-0.2) 		431
(3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 53.4
(3)
P 		28.7
(-3)
M 		39
(-0.5)
A 		28.8
(-3)
P 		25
B 67.5
(3)
P 		26.3
(-3)
A 		29.9
(-2.5)
A 		35
(-1.7)
P 		41
C 53.3
(3)
P 		40.5
(-1)
A 		37.3
(-2)
A 		34.1
(-3)
P 		19
avr 58.1
(3) 		31.8
(-3) 		35.4
(-2.2) 		32.6
(-2.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 37.3
(-2.9)
P 		56.8
(-0.7)
P 		36.8
(-3)
P 		53
(-1.1)
P 		88.5
(3)
P 		84.4
(2.5)
P 		52
B 58.3
(-1.9)
P 		41.8
(-2.6)
P 		31.5
(-3)
P 		63.2
(-1.7)
P 		118.8
(0.6)
P 		176.4
(3)
P 		145
C 56.8
(-2.3)
P 		46.2
(-2.9)
P 		56
(-2.3)
P 		43.4
(-3)
P 		82.9
(-0.9)
P 		158.5
(3)
P 		115
avr 50.8
(-2.4) 		48.3
(-2.6) 		41.4
(-3) 		53.2
(-2.3) 		96.7
(0.4) 		139.8
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13820
Sequence Type Exemplar sequence
Representative Public ID Y75B12B.4 NCBI
Target Description Y75B12B.4 /REP_DB=WormBase Gene ID /WP=CE20373 /TR=Q9XWB9 /GB=CAA21761.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074349 NCBI Caenorhabditis elegans Y75B12B.4 (Y75B12B.4) mRNA, complete cds. 11/11 None
SNAP00000027057 ENSEMBL cdna:SNAP chromosome:CEL140:V:15191060:15192131:1 11/11 None
GENEFINDER00000027068 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15191060:15192131:1 11/11 None
Y75B12B.4 ENSEMBL cdna:known chromosome:CEL140:V:15191060:15192131:1 gene:Y75B12B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15191059-15192131(+) 100.0 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Gene Symbol bath-36
Ensembl Y75B12B.4
Entrez Gene 190718 Entrez gene
SwissProt Q9XWB9 EMBL-EBI
WormBase CE20373 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21761 Hypothetical protein Y75B12B.4 [Caenorhabditis elegans] ref|NP_506750.1| Y75B12B.4 [Caenorhabditis elegans] 0.0
blast CAA91323 Hypothetical protein F52H3.3 [Caenorhabditis elegans] ref|NP_496172.1| F52H3.3 [Caenorhabditis elegans] 6.0E-45
blast CAE59356 Hypothetical protein CBG02705 [Caenorhabditis briggsae] 5.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-26
Sequence
Target Sequence 
>C. ELEGANS:192950_AT
taagcatgccgttcttgaagtccaaattactgtcaacaagattgccggaattcatgagag
gattatcgagactttcgatcaacccaaggaacatcttaccgatgttgtgctggtgcttga
aggaaaacatgtccatgttggcaagcaagtgctcgcaacgagctcgcaattcttccaaaa
aatgttctattcgaatttcgccgaaaagacacaggctgagatcaaaatcgatgatgtgac
ccactctgagtttatcgatttgctcaatgtgatctaccccactcacatgctcattaatag
ttccaacgtgtctcacttgctcaagctgagcgatagattcgcggtgccaagagttctgga
aaaggctgaaacgtttttgattttggaccaaaagacccacttgatcgacaagctgaagtt
cgccgaagtctacagactctcaaggcttcaaaatgcatgcctttcgcaattggagaccag
cgaagatgttactgcgttgaagcatcacgaaaattataaatctctcgatcatataaccta
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCATGCCGTTCTTGAAGTCCAA 279 637 393 Antisense
TCGAGACTTTCGATCAACCCAAGGA 661 597 458 Antisense
TCGCAACGAGCTCGCAATTCTTCCA 356 599 545 Antisense
ATCGATGATGTGACCCACTCTGAGT 188 37 619 Antisense
TTTGCTCAATGTGATCTACCCCACT 505 667 651 Antisense
ACCCCACTCACATGCTCATTAATAG 368 89 668 Antisense
ATAGTTCCAACGTGTCTCACTTGCT 386 19 689 Antisense
GGACCAAAAGACCCACTTGATCGAC 83 523 777 Antisense
GAAGTTCGCCGAAGTCTACAGACTC 343 337 807 Antisense
ATGCCTTTCGCAATTGGAGACCAGC 524 41 849 Antisense
AAATCTCTCGATCATATAACCTACA 420 117 910 Antisense
Sequence Source Affymetrix Proprietary Database