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[192949_at]

Description C34B4.2 /REP_DB=WormBase Gene ID /WP=CE08564 /TR=Q18419 /GB=CAB01486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Activin types I and II receptor domain
Cluster 6grp_total > 70      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.4
(0.5)
A 		2.9
(-2.4)
A 		2.4
(-3)
A 		7.5
(3)
A 		5
B 5.4
(3)
A 		2.4
(-3)
A 		4
(0.2)
A 		4.3
(0.8)
A 		3
C 5.9
(-2.6)
A 		8.7
(-2.1)
A 		3.4
(-3)
A 		38.5
(3)
A 		35
avr 5.6
(-2) 		4.7
(-2.4) 		3.3
(-3) 		16.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.5
(3)
A 		2.3
(-3)
A 		3.8
(1.1)
A 		3.1
(-0.8)
A 		3.3
(-0.3)
A 		3.9
(1.4)
A 		2
B 2.8
(-0.8)
A 		4.3
(3)
A 		2.3
(-2)
A 		4.1
(2.5)
A 		1.9
(-3)
A 		3.9
(2)
A 		2
C 2.4
(-2.8)
A 		5.2
(-0.5)
A 		4.1
(-1.4)
A 		9.5
(3)
A 		2.2
(-3)
A 		2.6
(-2.7)
A 		7
avr 3.2
(-1.6) 		3.9
(-0.3) 		3.4
(-1.3) 		5.6
(3) 		2.5
(-3) 		3.5
(-1.1) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.1
(-0.9)
A 		1
B 1.7
(3)
A 		0.6
(-3)
A 		0.9
(-1.4)
A 		0.9
(-1.4)
A 		1
C 2
(-2.1)
A 		2.5
(-1.5)
A 		1.2
(-3)
A 		6.5
(3)
A 		5
avr 1.9
(0.2) 		1.2
(-2.1) 		0.9
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
(3)
A 		0.9
(0)
A 		0
B 1
(-0.3)
A 		1.4
(2.3)
A 		0.6
(-3)
A 		1.1
(0.3)
A 		0.8
(-1.7)
A 		1.5
(3)
A 		1
C 0.9
(-2)
A 		1.6
(1.5)
A 		1
(-1.5)
A 		1.9
(3)
A 		0.7
(-3)
A 		0.9
(-2)
A 		1
avr 0.9
(-1.8) 		1.3
(3) 		0.8
(-3) 		1.3
(3) 		0.8
(-3) 		1.1
(0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14101
Sequence Type Exemplar sequence
Representative Public ID C34B4.2 NCBI
Target Description C34B4.2 /REP_DB=WormBase Gene ID /WP=CE08564 /TR=Q18419 /GB=CAB01486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Activin types I and II receptor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028527 NCBI Caenorhabditis elegans C34B4.5 (C34B4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000013052 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13098632:13100403:1 9/11 None
C34B4.5 ENSEMBL cdna:known chromosome:CEL140:V:13098632:13100048:1 gene:C34B4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13085096-13100048(+) 96.11 100.0
Public Domain and Genome References
Gene Title
Ensembl C34B4.5
Entrez Gene 3564856 Entrez gene
SwissProt Q6BES6 EMBL-EBI
WormBase CE36690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04725 Hypothetical protein C34B4.5 [Caenorhabditis elegans] ref|NP_001023698.1| C34B4.5 [Caenorhabditis elegans] 1.0E-134
blast CAH04725 Hypothetical protein C34B4.5 [Caenorhabditis elegans] ref|NP_001023698.1| C34B4.5 [Caenorhabditis elegans] 1.0E-109
blast CAE62588 Hypothetical protein CBG06702 [Caenorhabditis briggsae] 1.0E-55
blast AAC78201 Hypothetical protein F54E2.5 [Caenorhabditis elegans] ref|NP_503762.1| F54E2.5 [Caenorhabditis elegans] 6.0E-52
blast CAE62588 Hypothetical protein CBG06702 [Caenorhabditis briggsae] 8.0E-41
blast AAC78201 Hypothetical protein F54E2.5 [Caenorhabditis elegans] ref|NP_503762.1| F54E2.5 [Caenorhabditis elegans] 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 3.1E-96
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 3.1E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023698.1 5 40-71,78-100,115-134,177-194,209-231
C34B4.5 5 40-71,78-100,115-134,177-194,209-231
GENEFINDER00000013052 7 39-70,77-99,119-141,162-181,223-245,258-280,295-314
Sequence
Target Sequence 
>C. ELEGANS:192949_AT
tcttgtgttcaatgtcccagcaaccctattttcagtggctaccgaacaaccatacattta
catctggcttgtgatgatctatgttcttccatccttaacattgatatttctcggtcaaga
taactgtatgtatcgttttgataatcgggaacagaagttcactttaacctgtttcaatac
tgttggcacgaacaaagttaaaattgaaattccacgaattattcaaattattgaagacac
aattcaaattgtgataccaattataattttaatattgtacattgctttagttataaagat
tataaagatgaagaaaacttcgagaaataaaactgaaatcattattttgaagcaagcatt
cttcattttcttaatgtttcaaatctacaacatcatagttctatatggaaagacactgaa
aatgacgaccgtcacggcattttatctgaaacgagcaattcatacggcggagatattcgc
tggagcaaccacgccatgcttcgtttttttcacttctaaggagatcaaaaagttggtttc
gaataaaattacagctggctcacaagggaactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGTGTTCAATGTCCCAGCAACC 422 617 3459 Antisense
AGCAACCCTATTTTCAGTGGCTACC 701 75 3477 Antisense
GGCTACCGAACAACCATACATTTAC 95 539 3495 Antisense
GATGATCTATGTTCTTCCATCCTTA 89 411 3531 Antisense
GAAGTTCACTTTAACCTGTTTCAAT 464 337 3612 Antisense
AAGCAAGCATTCTTCATTTTCTTAA 160 151 3808 Antisense
GACCGTCACGGCATTTTATCTGAAA 97 383 3885 Antisense
ACGAGCAATTCATACGGCGGAGATA 325 91 3909 Antisense
AGATATTCGCTGGAGCAACCACGCC 692 65 3929 Antisense
ATGCTTCGTTTTTTTCACTTCTAAG 430 43 3954 Antisense
TACAGCTGGCTCACAAGGGAACTCG 672 569 4008 Antisense
Sequence Source Affymetrix Proprietary Database