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[192948_at] glutathione S-transferase

Description F11G11.2 /REP_DB=WormBase Gene ID /WP=CE07055 /GEN=gst-7 /TR=P91253 /GB=AAB37846.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutathione S-transferase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 05      6grp_total > 34      4grp_total > 02      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11756
1 2 3 4 range
A 2820.1
(-2.6)
P 		2101.6
(-3)
P 		3281.4
(-2.3)
P 		12711.1
(3)
P 		10610
B 2922.4
(-2.9)
P 		2820.4
(-3)
P 		3198.4
(-2.8)
P 		13722.3
(3)
P 		10902
C 2729.1
(-3)
P 		2808.8
(-3)
P 		2980.8
(-2.9)
P 		13857.2
(3)
P 		11128
avr 2823.9
(-2.9) 		2576.9
(-3) 		3153.5
(-2.7) 		13430.2
(3) 		10853

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7218
1 2 3 4 5 6 range
A 10496.1
(3)
P 		6436.9
(-0.5)
P 		9287.7
(2)
P 		5891.4
(-1)
P 		3511.5
(-3)
P 		4611.5
(-2.1)
P 		6985
B 10228.6
(3)
P 		6320.5
(-0.6)
P 		8953.7
(1.8)
P 		5879.4
(-1)
P 		3665.5
(-3)
P 		4547.1
(-2.2)
P 		6563
C 8483.8
(2.8)
P 		6504.5
(0.6)
P 		8629.9
(3)
P 		5860.7
(-0.1)
P 		3277.7
(-3)
P 		4512.9
(-1.6)
P 		5352
avr 9736.2
(3) 		6420.6
(-0.2) 		8957.1
(2.3) 		5877.2
(-0.7) 		3484.9
(-3) 		4557.2
(-2) 		6251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2468
1 2 3 4 range
A 1026.8
(-0.6)
P 		456.2
(-3)
P 		857.8
(-1.3)
P 		1860.7
(3)
P 		1405
B 931.9
(-2.4)
P 		696.6
(-3)
P 		741.2
(-2.9)
P 		2924.2
(3)
P 		2228
C 903.4
(-2.6)
P 		807.5
(-3)
P 		1038.9
(-2.1)
P 		2336.5
(3)
P 		1529
avr 954
(-2) 		653.4
(-3) 		879.3
(-2.2) 		2373.8
(3) 		1720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2500
1 2 3 4 5 6 range
A 1934.9
(1.3)
P 		2289.3
(3)
P 		2022.7
(1.7)
P 		1494.2
(-0.9)
P 		1059.6
(-3)
P 		1122.8
(-2.7)
P 		1230
B 3559.1
(3)
P 		2103.8
(-1.2)
P 		2174.2
(-1)
P 		1557.3
(-2.8)
P 		1489.2
(-3)
P 		1695.6
(-2.4)
P 		2070
C 3144.6
(3)
P 		1984.7
(-0.3)
P 		2196.4
(0.3)
P 		1178.6
(-2.7)
P 		1060.6
(-3)
P 		1510.7
(-1.7)
P 		2084
avr 2879.5
(3) 		2125.9
(0.3) 		2131.1
(0.3) 		1410
(-2.3) 		1203.1
(-3) 		1443
(-2.1) 		1676
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5972
Sequence Type Exemplar sequence
Representative Public ID F11G11.2 NCBI
Target Description F11G11.2 /REP_DB=WormBase Gene ID /WP=CE07055 /GEN=gst-7 /TR=P91253 /GB=AAB37846.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062482 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-7) (gst-7) mRNA, complete cds. 11/11 None
SNAP00000005490 ENSEMBL cdna:SNAP chromosome:CEL140:II:4882105:4883277:1 11/11 None
GENEFINDER00000005494 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4882105:4883277:1 11/11 None
F11G11.2 ENSEMBL cdna:known chromosome:CEL140:II:4881668:4883326:1 gene:F11G11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4882102-4883275(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-7
Ensembl F11G11.2
Entrez Gene 173842 Entrez gene
SwissProt P91253 EMBL-EBI
WormBase CE07055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494883 Glutathione S-Transferase family member (gst-7) [Caenorhabditis elegans] gb|AAB37846.1| Glutathione s-transferase protein 7 [Caenorhabditis elegans] sp|P91253|GST7_CAEEL Probable glutathione S-transferase 7 (GST class-sigma) 1.0E-110
blast CAE58992 Hypothetical protein CBG02265 [Caenorhabditis briggsae] emb|CAE56959.1| Hypothetical protein CBG24809 [Caenorhabditis briggsae] 1.0E-102
blast NP_494884 Glutathione S-Transferase family member (gst-8) [Caenorhabditis elegans] gb|AAB37847.1| Glutathione s-transferase protein 8 [Caenorhabditis elegans] sp|P91254|GST8_CAEEL Probable glutathione S-transferase 8 (GST class-sigma) 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.9E-20
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.5E-7
Sequence
Target Sequence 
>C. ELEGANS:192948_AT
atcgtacttcccaattcgtggagctggagagattgctcgtcagatcttggcctacgctgg
acaagacttcgaggacaacagaatcccaaaggaggaatggccagctgtcaagccaagcac
tccattcggacagcttccactccttgaagttgacggaaaggttcttgcccaatctcatgc
tatcgcccgttacttggctcgtcagttcggaatcaatggaaagtgtgcatgggaggaggc
tcaagtcaactcggttgctgatcaattcaaggattacctcaacgaagttcgtccatactt
catggtgaagatgggatttgctgaaggagatctcgatgctcttgccaaggacgtcttcct
tccaggattcaagaagcactatggattctttgctaacttcctcaagtcggctggatccgg
atacttggttggagactctttgacctttgtcgacttgctcgtcgctcagcacactgctga
tcttctggctgccaacgcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTACTTCCCAATTCGTGGAGCT 248 35 30 Antisense
AGAGATTGCTCGTCAGATCTTGGCC 688 67 57 Antisense
TGGCCTACGCTGGACAAGACTTCGA 679 543 77 Antisense
ACAGCTTCCACTCCTTGAAGTTGAC 702 107 159 Antisense
TGACGGAAAGGTTCTTGCCCAATCT 616 567 180 Antisense
TTACTTGGCTCGTCAGTTCGGAATC 441 681 219 Antisense
CGATGCTCTTGCCAAGGACGTCTTC 491 249 363 Antisense
TGGATTCTTTGCTAACTTCCTCAAG 356 551 411 Antisense
CTTCCTCAAGTCGGCTGGATCCGGA 373 219 426 Antisense
CTCTTTGACCTTTGTCGACTTGCTC 517 227 465 Antisense
TGATCTTCTGGCTGCCAACGCAGCT 499 565 507 Antisense
Sequence Source Affymetrix Proprietary Database