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[192947_s_at] Yeast hyptothetical protein YFC5 like

Description T19B10.8 /REP_DB=WormBase Gene ID /WP=CE06462 /TR=Q22561 /GB=CAA98541.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hyptothetical protein YFC5 like
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 68      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 68      4grp_total > 55      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 239.9
(2.9)
P 		121.9
(-3)
P 		184.9
(0.1)
P 		242.7
(3)
P 		121
B 215.4
(3)
P 		179.4
(-0.4)
P 		212.9
(2.8)
P 		151.2
(-3)
P 		64
C 239.6
(3)
P 		220
(-0.2)
P 		203.4
(-3)
P 		212.3
(-1.5)
P 		36
avr 231.6
(3) 		173.8
(-3) 		200.4
(-0.2) 		202.1
(-0.1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 217.4
(-2.7)
P 		268.2
(-1.4)
P 		205.5
(-3)
P 		237.7
(-2.2)
P 		244.7
(-2)
P 		442
(3)
P 		237
B 280.7
(0.6)
P 		252.7
(-0.2)
P 		158.4
(-3)
P 		261.9
(0.1)
P 		296
(1.1)
P 		359.7
(3)
P 		201
C 226.1
(-1.3)
P 		267.9
(0.8)
P 		278.2
(1.3)
P 		191
(-3)
P 		224.1
(-1.4)
P 		312
(3)
P 		121
avr 241.4
(-2) 		262.9
(-1.1) 		214
(-3) 		230.2
(-2.4) 		254.9
(-1.4) 		371.2
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 87.3
(3)
P 		26.5
(-3)
P 		48.3
(-0.8)
P 		35.5
(-2.1)
P 		61
B 68.7
(3)
P 		44.3
(-1)
P 		49.3
(-0.2)
P 		32.2
(-3)
P 		37
C 79.3
(3)
P 		63.2
(0.8)
P 		70.9
(1.8)
P 		35.8
(-3)
P 		44
avr 78.4
(3) 		44.7
(-1.6) 		56.2
(-0) 		34.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 40.1
(-3)
P 		95.4
(1.9)
P 		44.8
(-2.6)
P 		60.3
(-1.2)
P 		73.8
(-0)
P 		107.6
(3)
P 		68
B 97.7
(0.7)
P 		84.1
(-0.1)
P 		38.5
(-3)
P 		69.4
(-1.1)
P 		120.3
(2.1)
P 		134.1
(3)
P 		96
C 83.8
(1.1)
P 		81.7
(0.9)
P 		70.8
(-0.1)
P 		38.4
(-3)
P 		72.5
(0.1)
P 		104.4
(3)
P 		66
avr 73.9
(-0.9) 		87.1
(0.3) 		51.4
(-3) 		56
(-2.6) 		88.9
(0.5) 		115.4
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13579
Sequence Type Exemplar sequence
Representative Public ID T19B10.8 NCBI
Target Description T19B10.8 /REP_DB=WormBase Gene ID /WP=CE06462 /TR=Q22561 /GB=CAA98541.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hyptothetical protein YFC5 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073454 NCBI Caenorhabditis elegans T19B10.8 (T19B10.8) mRNA, complete cds. 11/11 None
SNAP00000024749 ENSEMBL cdna:SNAP chromosome:CEL140:V:11244491:11246961:1 11/11 None
GENEFINDER00000024754 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11244491:11246961:1 11/11 None
T19B10.8 ENSEMBL cdna:known chromosome:CEL140:V:11244491:11247290:1 gene:T19B10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11244490-11246961(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hyptothetical protein YFC5 like
Ensembl T19B10.8
Entrez Gene 179556 Entrez gene
SwissProt Q22561 EMBL-EBI
WormBase CE06462 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98541 Hypothetical protein T19B10.8 [Caenorhabditis elegans] ref|NP_505855.1| T19B10.8 [Caenorhabditis elegans] 0.0
blast CAE75199 Hypothetical protein CBG23146 [Caenorhabditis briggsae] 0.0
blast AAH81123 MGC83827 protein [Xenopus laevis] 3.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505855.1 8 16-38,464-486,491-510,525-547,568-590,600-622,635-657,667-689
T19B10.8 8 16-38,464-486,491-510,525-547,568-590,600-622,635-657,667-689
SNAP00000024749 8 16-38,464-486,491-510,525-547,568-590,600-622,635-657,667-689
GENEFINDER00000024754 8 16-38,464-486,491-510,525-547,568-590,600-622,635-657,667-689
Sequence
Target Sequence 
>C. ELEGANS:192947_S_AT
gaatggcctgtacctggttggatcagcaatcacaatcatggcaagaaatgagggatcaat
tgttttgattattctcctcgcatatcgtcatcatccacgggcagttcttctgattctccc
gacattgatcccatatattctcaaactggtcggcttcccgtggttctcgacggattctct
tatcgtgtaccaactgcaatatcaacctgcattttacgccggcggactctatctcttcgg
tcttgtttcaaatctcggaaatcgacagattactttgcgattactcgtttacggacttgt
gccagcattcctctatttaatcacatcgcctctcgaactattttccggattcaccctcat
catattcagcacagctcgcttcgttacattcccatcacgtaaatctgtcactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGCCTGTACCTGGTTGGATCA 45 333 1707 Antisense
ATTGTTTTGATTATTCTCCTCGCAT 491 5 1765 Antisense
ACGGGCAGTTCTTCTGATTCTCCCG 655 95 1803 Antisense
CTCCCGACATTGATCCCATATATTC 199 235 1822 Antisense
GATTCTCTTATCGTGTACCAACTGC 594 431 1879 Antisense
TATCTCTTCGGTCTTGTTTCAAATC 310 659 1936 Antisense
TACTCGTTTACGGACTTGTGCCAGC 223 647 1988 Antisense
TGCCAGCATTCCTCTATTTAATCAC 130 587 2006 Antisense
GCCTCTCGAACTATTTTCCGGATTC 344 283 2034 Antisense
CCTCATCATATTCAGCACAGCTCGC 707 267 2061 Antisense
TCCCATCACGTAAATCTGTCACTCC 64 599 2096 Antisense
Sequence Source Affymetrix Proprietary Database