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[192942_s_at] Zinc finger, C3HC4 type (RING finger)

Description F11A10.3 /REP_DB=WormBase Gene ID /WP=CE23642 /TR=Q19336 /GB=CAA92594.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 54      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 249.1
(3)
P 		177.3
(-0.5)
A 		125.1
(-3)
A 		160.3
(-1.3)
P 		124
B 239.8
(3)
P 		185
(-1)
A 		167.7
(-2.2)
P 		157
(-3)
P 		83
C 289.7
(3)
P 		153
(-1.9)
A 		248.7
(1.5)
P 		121.8
(-3)
A 		168
avr 259.5
(3) 		171.8
(-1.7) 		180.5
(-1.2) 		146.4
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 275.3
(-3)
P 		308
(-2.1)
P 		399.3
(0.4)
P 		354.6
(-0.8)
P 		350.8
(-0.9)
P 		493
(3)
P 		218
B 299.2
(-2.3)
P 		293.6
(-2.4)
P 		349.9
(-1.5)
P 		268
(-2.8)
P 		254.9
(-3)
P 		634.8
(3)
P 		380
C 249.4
(-3)
P 		386
(-0.1)
P 		332.1
(-1.2)
P 		374.4
(-0.4)
P 		271.7
(-2.5)
P 		532.5
(3)
P 		283
avr 274.6
(-3) 		329.2
(-1.8) 		360.4
(-1.2) 		332.3
(-1.8) 		292.5
(-2.6) 		553.4
(3) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 90.7
(3)
P 		38.5
(-1.7)
A 		32.7
(-2.2)
A 		23.5
(-3)
P 		67
B 76.5
(3)
P 		45.7
(-1.3)
A 		38.9
(-2.2)
P 		33.4
(-3)
P 		43
C 95.9
(3)
P 		44
(-1.1)
A 		86.7
(2.3)
P 		20.5
(-3)
A 		75
avr 87.7
(3) 		42.7
(-1.4) 		52.8
(-0.4) 		25.8
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 50.8
(-3)
P 		109.5
(2.1)
P 		87
(0.1)
P 		89.9
(0.4)
P 		105.8
(1.8)
P 		120
(3)
P 		69
B 104.1
(-1.8)
P 		97.7
(-2)
P 		85
(-2.5)
P 		71
(-3)
P 		103.6
(-1.8)
P 		236.7
(3)
P 		166
C 92.4
(-2)
P 		117.8
(-0.5)
P 		84.5
(-2.5)
P 		75.3
(-3)
P 		87.9
(-2.3)
P 		178.3
(3)
P 		103
avr 82.4
(-2.8) 		108.3
(-1.2) 		85.5
(-2.6) 		78.7
(-3) 		99.1
(-1.8) 		178.3
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9060
Sequence Type Exemplar sequence
Representative Public ID F11A10.3 NCBI
Target Description F11A10.3 /REP_DB=WormBase Gene ID /WP=CE23642 /TR=Q19336 /GB=CAA92594.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069892 NCBI Caenorhabditis elegans F11A10.3 (F11A10.3) mRNA, complete cds. 11/11 None
SNAP00000006204 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12089445:12090548:-1 11/11 None
GENEFINDER00000006216 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12089445:12090673:-1 11/11 None
F11A10.3 ENSEMBL cdna:known chromosome:CEL140:IV:12089217:12092182:-1 gene:F11A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12089450-12093390(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl F11A10.3
Entrez Gene 178150 Entrez gene
SwissProt Q19336 EMBL-EBI
WormBase CE35177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92594 Hypothetical protein F11A10.3 [Caenorhabditis elegans] ref|NP_502293.2| F11A10.3 [Caenorhabditis elegans] 0.0
blast CAE62179 Hypothetical protein CBG06226 [Caenorhabditis briggsae] 1.0E-139
blast CAA92594 Hypothetical protein F11A10.3 [Caenorhabditis elegans] ref|NP_502293.2| F11A10.3 [Caenorhabditis elegans] 1.0E-119
blast CAE62179 Hypothetical protein CBG06226 [Caenorhabditis briggsae] 1.0E-109
blast XP_396649 PREDICTED: similar to ENSANGP00000026153, partial [Apis mellifera] 1.0E-32
blast EAA07500 ENSANGP00000021884 [Anopheles gambiae str. PEST] ref|XP_312405.2| ENSANGP00000021884 [Anopheles gambiae str. PEST] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.2E-11
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.2E-11
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.2E-11
Sequence
Target Sequence 
>C. ELEGANS:192942_S_AT
ggataacaacacgtgtccaacatgtggaacatttattcatggatctcatccaactcatta
cgtgacttatgatcgagcagtcaatgaacttgtcaatcaatttgtgccaaaaatggagaa
caacgagttggacgtacggaaaacgtttctaagagactgccgagaagctctaggaattga
tacggcagccgaagatcgcgagagaaaagaacgactggaaagagaacgaataactgggac
aaatagatgttatccattggaaaggcctagattctcacatcatagagatgattgtcaagt
gactgttaatctactccccgggactgctaatctacctcttatcactcgaccgtatgttcg
gtgcagtgagatgactactatgaatactttgaaaaaattcctatctcttcaaatatggga
cgatcagagccggtattctgatttagacatgttttgtgacggacaactcatgggaaaaga
cttttcggttcgctttgtttggatgatgaagcgccgtggtcaacccaaatctgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAACAACACGTGTCCAACATGT 685 509 1773 Antisense
GGATCTCATCCAACTCATTACGTGA 267 511 1813 Antisense
GATACGGCAGCCGAAGATCGCGAGA 638 423 1951 Antisense
CAAGTGACTGTTAATCTACTCCCCG 694 183 2068 Antisense
TAATCTACTCCCCGGGACTGCTAAT 4 637 2079 Antisense
CTCTTATCACTCGACCGTATGTTCG 91 231 2108 Antisense
GTATGTTCGGTGCAGTGAGATGACT 191 451 2124 Antisense
ATGGGACGATCAGAGCCGGTATTCT 566 47 2187 Antisense
TTTTCGGTTCGCTTTGTTTGGATGA 623 671 2254 Antisense
GGATGATGAAGCGCCGTGGTCAACC 282 513 2273 Antisense
GCCGTGGTCAACCCAAATCTGAACC 110 283 2285 Antisense
Sequence Source Affymetrix Proprietary Database