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[192940_at] Zinc finger, C3HC4 type (RING finger)

Description H05L14.2 /REP_DB=WormBase Gene ID /WP=CE16169 /TR=O17709 /GB=CAA99823.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 48      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 53.5
(-3)
A 		62.4
(-2.4)
A 		54.3
(-2.9)
A 		139
(3)
A 		86
B 95.2
(3)
A 		30.8
(-1.4)
A 		9.6
(-2.8)
A 		7
(-3)
A 		88
C 43.5
(-2.3)
A 		40.8
(-3)
A 		48.7
(-0.9)
A 		63.9
(3)
A 		23
avr 64.1
(1.9) 		44.7
(-1.7) 		37.5
(-3) 		70
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 109.9
(3)
A 		11.8
(-3)
A 		50.5
(-0.6)
A 		41.4
(-1.2)
A 		64.3
(0.2)
A 		69.7
(0.5)
A 		98
B 43.1
(-1.5)
A 		97.7
(3)
A 		38.1
(-2)
A 		35.7
(-2.2)
A 		25.6
(-3)
A 		55.3
(-0.5)
A 		72
C 64.7
(2)
A 		16.6
(-3)
A 		33.6
(-1.3)
A 		74.9
(3)
A 		30.2
(-1.6)
A 		55.5
(1)
A 		58
avr 72.6
(3) 		42
(-2.6) 		40.7
(-2.9) 		50.7
(-1) 		40
(-3) 		60.2
(0.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19.5
(2.2)
A 		13.6
(-3)
A 		14.2
(-2.5)
A 		20.4
(3)
A 		7
B 30.4
(3)
A 		7.6
(-1.7)
A 		2.2
(-2.9)
A 		1.5
(-3)
A 		29
C 14.4
(0.5)
A 		11.7
(-2.1)
A 		17
(3)
A 		10.8
(-3)
A 		6
avr 21.4
(3) 		11
(-2.9) 		11.1
(-2.9) 		10.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 20.3
(3)
A 		4.2
(-3)
A 		11
(-0.5)
A 		10.5
(-0.7)
A 		19.4
(2.7)
A 		17
(1.8)
A 		16
B 15
(-1.5)
A 		32.5
(3)
A 		9.2
(-3)
A 		9.5
(-2.9)
A 		10.4
(-2.7)
A 		20.6
(-0.1)
A 		23
C 24
(3)
A 		5.1
(-3)
A 		8.6
(-1.9)
A 		15.1
(0.2)
A 		9.8
(-1.5)
A 		18.6
(1.3)
A 		19
avr 19.8
(3) 		13.9
(-0.5) 		9.6
(-3) 		11.7
(-1.8) 		13.2
(-0.9) 		18.7
(2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1687
Sequence Type Exemplar sequence
Representative Public ID H05L14.2 NCBI
Target Description H05L14.2 /REP_DB=WormBase Gene ID /WP=CE16169 /TR=O17709 /GB=CAA99823.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059798 NCBI Caenorhabditis elegans H05L14.2 (H05L14.2) mRNA, complete cds. 11/11 None
SNAP00000016366 ENSEMBL cdna:SNAP chromosome:CEL140:I:7993462:8000560:1 9/11 None
GENEFINDER00000016367 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7999958:8000572:1 9/11 None
H05L14.2 ENSEMBL cdna:known chromosome:CEL140:I:7989720:8001263:1 gene:H05L14.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028894 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7989650-8000772(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl H05L14.2
Entrez Gene 172577 Entrez gene
SwissProt O17709 EMBL-EBI
WormBase CE38199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99823 Hypothetical protein H05L14.2 [Caenorhabditis elegans] emb|CAB16922.2| Hypothetical protein H05L14.2 [Caenorhabditis elegans] ref|NP_492199.2| H05L14.2 [Caenorhabditis elegans] 0.0
blast CAE63713 Hypothetical protein CBG08234 [Caenorhabditis briggsae] 0.0
blast CAA99823 Hypothetical protein H05L14.2 [Caenorhabditis elegans] emb|CAB16922.2| Hypothetical protein H05L14.2 [Caenorhabditis elegans] ref|NP_492199.2| H05L14.2 [Caenorhabditis elegans] 2.0E-93
blast CAE63713 Hypothetical protein CBG08234 [Caenorhabditis briggsae] 1.0E-27
Sequence
Target Sequence 
>C. ELEGANS:192940_AT
gtaaccatctcaattgtatcttccaatatcgcttcgtgctcttcatctccttctccacca
acatctccaactcttccgatattatcagaagctcgccgccaactgaaattaactcaaaag
ttttctgcggaatttgatggcgatgagctccgtttctttgcacgtgatctcttcgaatgg
tataactctacaaaagccaatcacaaagaaaggaaaaccgccgagaagcagctgaaagag
tatgaagtggcgctggattgtatcgagtgtgcaattcatgagaatttggagatgttgaag
cttggagtcgtcgaaaatctgagagttgttcctgatgtgccgatgccgttctctgagact
gtaatgaagaagatgttccaatgcagtggatatgaattggatgttgttactgagagagag
gaggttgtagaggaggaagacggttgcttgatttgtaccgaaattatcgaagaggccgtg
gagacagtaacctgtgatacatgcacacgggagtaccactatcattgtatcagtcgatgg
ttgaagatcaactccgtgtgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCATCTCAATTGTATCTTCCA 161 463 5881 Antisense
CATCTCCAACTCTTCCGATATTATC 303 213 5942 Antisense
CGATATTATCAGAAGCTCGCCGCCA 553 247 5957 Antisense
TTTGATGGCGATGAGCTCCGTTTCT 494 667 6013 Antisense
TTTCTTTGCACGTGATCTCTTCGAA 95 673 6033 Antisense
GGAAAACCGCCGAGAAGCAGCTGAA 82 527 6092 Antisense
GGCGCTGGATTGTATCGAGTGTGCA 682 541 6129 Antisense
CTGAGAGTTGTTCCTGATGTGCCGA 667 237 6199 Antisense
CCGATGCCGTTCTCTGAGACTGTAA 82 265 6220 Antisense
TGCACACGGGAGTACCACTATCATT 694 575 6382 Antisense
GGTTGAAGATCAACTCCGTGTGCCC 623 507 6419 Antisense
Sequence Source Affymetrix Proprietary Database